PDB entry 3bem

View 3bem on RCSB PDB site
Description: Crystal structure of putative nitroreductase ydfN (2632848) from Bacillus subtilis at 1.65 A resolution
Class: oxidoreductase
Keywords: 2632848, putative nitroreductase ydfN, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, Flavoprotein, FMN, NAD, NADP, Oxidoreductase
Deposited on 2007-11-19, released 2007-12-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative NAD(P)H nitroreductase ydfN
    Species: Bacillus subtilis [TaxId:1423]
    Gene: 2632848, ydfN, BSU05480
    Database cross-references and differences (RAF-indexed):
    • Uniprot P96692 (12-217)
      • leader sequence (11)
      • engineered (158-160)
    Domains in SCOPe 2.08: d3bema1, d3bema2
  • Chain 'B':
    Compound: Putative NAD(P)H nitroreductase ydfN
    Species: Bacillus subtilis [TaxId:1423]
    Gene: 2632848, ydfN, BSU05480
    Database cross-references and differences (RAF-indexed):
    • Uniprot P96692 (12-217)
      • leader sequence (8-11)
      • engineered (158-160)
    Domains in SCOPe 2.08: d3bemb1, d3bemb2
  • Heterogens: NI, ACT, FMN, PGO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3bemA (A:)
mgsdkihhhhhhmaefthlvnerrsasnflsghpitkedlnemfelvalapsafnlqhtk
yvtvldqdvkeklkqaangqykvvsssavllvlgdkqayqqaadiyeglkvlgilnkqey
dhmvqdtvsfyenrgeqfkrdeairnaslsammfmlsaaaagwdtcpmigfdaeavkril
niddqfevvmmitigkektesrrprgyrkpvnefveym

    Sequence, based on observed residues (ATOM records): (download) 
    >3bemA (A:)
hmaefthlvnerrsasnflsghpitkedlnemfelvalapsafnlqhtkyvtvldqdvke
klkqaangqykvvsssavllvlgdkqayqqaadiyeglkvlgilnkqeydhmvqdtvsfy
enrgeqfkrdeairnaslsammfmlsaaaagwdtcpmigfdaeavkrilniddqfevvmm
itigkektesrrprgyrkpvnefveym

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3bemB (B:)
mgsdkihhhhhhmaefthlvnerrsasnflsghpitkedlnemfelvalapsafnlqhtk
yvtvldqdvkeklkqaangqykvvsssavllvlgdkqayqqaadiyeglkvlgilnkqey
dhmvqdtvsfyenrgeqfkrdeairnaslsammfmlsaaaagwdtcpmigfdaeavkril
niddqfevvmmitigkektesrrprgyrkpvnefveym

    Sequence, based on observed residues (ATOM records): (download) 
    >3bemB (B:)
hhhhmaefthlvnerrsasnflsghpitkedlnemfelvalapsafnlqhtkyvtvldqd
vkeklkqaangqykvvsssavllvlgdkqayqqaadiyeglkvlgilnkqeydhmvqdtv
sfyenrgeqfkrdeairnaslsammfmlsaaaagwdtcpmigfdaeavkrilniddqfev
vmmitigkektesrrprgyrkpvnefveym