PDB entry 3bd4

View 3bd4 on RCSB PDB site
Description: Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals
Class: immune system
Keywords: beta sandwich, metal, IMMUNE SYSTEM
Deposited on 2007-11-14, released 2008-04-01
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.213
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: catalytic antibody
    Species: Mus musculus [TaxId:10090]
    Gene: 3d8 vl
    Database cross-references and differences (RAF-indexed):
    • PDB 3BD4 (0-111)
    Domains in SCOPe 2.07: d3bd4a_
  • Chain 'B':
    Compound: catalytic antibody
    Species: Mus musculus [TaxId:10090]
    Gene: 3d8 vl
    Database cross-references and differences (RAF-indexed):
    • PDB 3BD4 (0-111)
    Domains in SCOPe 2.07: d3bd4b_
  • Heterogens: CD, BTB, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3bd4A (A:)
lvmsqspsslavsagekvtmsckssqslfnsrtrknylawyqqkpgqspklliywastre
sgvpdrftgsgsgtdftltissvqaedlavyyckqsyyhmytfgsgtkleik

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3bd4B (B:)
lvmsqspsslavsagekvtmsckssqslfnsrtrknylawyqqkpgqspklliywastre
sgvpdrftgsgsgtdftltissvqaedlavyyckqsyyhmytfgsgtkleik

    Sequence, based on observed residues (ATOM records): (download) 
    >3bd4B (B:)
lvmsqspsslavsagekvtmsckssqslfnsrtrknylawyqqkpgqspklliywastre
sgvpdrftgsgsgtdftltissvqaedlavyyckqsytfgsgtkleik