PDB entry 3bd3

View 3bd3 on RCSB PDB site
Description: Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals
Class: immune system
Keywords: 3d8, catalytic antibody, anti-DNA, IMMUNE SYSTEM
Deposited on 2007-11-14, released 2008-04-01
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.229
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: catalytic antibody
    Species: Mus musculus [TaxId:10090]
    Gene: 3d8 vl
    Database cross-references and differences (RAF-indexed):
    • PDB 3BD3 (0-111)
    Domains in SCOPe 2.07: d3bd3a_
  • Chain 'B':
    Compound: catalytic antibody
    Species: Mus musculus [TaxId:10090]
    Gene: 3d8 vl
    Database cross-references and differences (RAF-indexed):
    • PDB 3BD3 (0-111)
    Domains in SCOPe 2.07: d3bd3b_
  • Heterogens: BTB, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3bd3A (A:)
    lvmsqspsslavsagekvtmsckssqslfnsrtrknylawyqqkpgqspklliywastre
    sgvpdrftgsgsgtdftltissvqaedlavyyckqsyyhmytfgsgtkleik
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3bd3B (B:)
    lvmsqspsslavsagekvtmsckssqslfnsrtrknylawyqqkpgqspklliywastre
    sgvpdrftgsgsgtdftltissvqaedlavyyckqsyyhmytfgsgtkleik