PDB entry 3b6p

View 3b6p on RCSB PDB site
Description: Structure of TREX1 in complex with a nucleotide and inhibitor ions (sodium and zinc)
Class: hydrolase
Keywords: TREX1, DEDD, exonuclease, DnaQ, sodium, zinc, catalysis, inhibition, deoxy-thimidine monophosphate (dTMP), DNA damage, DNA repair, Hydrolase, Magnesium, Nucleus, Phosphorylation
Deposited on 2007-10-29, released 2008-09-23
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-06-09, with a file datestamp of 2009-06-05.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.248
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Three prime repair exonuclease 1
    Species: Mus musculus [TaxId:10090]
    Gene: Trex1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3b6pa_
  • Chain 'B':
    Compound: Three prime repair exonuclease 1
    Species: Mus musculus [TaxId:10090]
    Gene: Trex1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3b6pb_
  • Chain 'C':
    Compound: Three prime repair exonuclease 1
    Species: Mus musculus [TaxId:10090]
    Gene: Trex1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3b6pc_
  • Chain 'D':
    Compound: Three prime repair exonuclease 1
    Species: Mus musculus [TaxId:10090]
    Gene: Trex1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3b6pd_
  • Heterogens: ZN, NA, TMP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3b6pA (A:)
    mkhhhhhhpmghmqtlifldleatglpssrpevtelcllavhrralentsisqghpppvp
    rpprvvdklslciapgkacspgaseitglskaelevqgrqrfddnlaillraflqrqpqp
    cclvahngdrydfpllqtelarlstpspldgtfcvdsiaalkaleqasspsgngsrksys
    lgsiytrlywqaptdshtaegdvltllsicqwkpqallqwvdeharpfstvkpmygtpat
    tgttnlr
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b6pA (A:)
    ghmqtlifldleatglpssrpevtelcllavhrralentsisqghpppvprpprvvdkls
    lciapgkacspgaseitglskaelevqgrqrfddnlaillraflqrqpqpcclvahngdr
    ydfpllqtelarlstpspldgtfcvdsiaalkaleqaksyslgsiytrlywqaptdshta
    egdvltllsicqwkpqallqwvdeharpfstvkpmyg
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3b6pB (B:)
    mkhhhhhhpmghmqtlifldleatglpssrpevtelcllavhrralentsisqghpppvp
    rpprvvdklslciapgkacspgaseitglskaelevqgrqrfddnlaillraflqrqpqp
    cclvahngdrydfpllqtelarlstpspldgtfcvdsiaalkaleqasspsgngsrksys
    lgsiytrlywqaptdshtaegdvltllsicqwkpqallqwvdeharpfstvkpmygtpat
    tgttnlr
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b6pB (B:)
    ghmqtlifldleatglpssrpevtelcllavhrralentsisqghpppvprpprvvdkls
    lciapgkacspgaseitglskaelevqgrqrfddnlaillraflqrqpqpcclvahngdr
    ydfpllqtelarlstpspldgtfcvdsiaalkaleqaksyslgsiytrlywqaptdshta
    egdvltllsicqwkpqallqwvdeharpfstvkpmyg
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3b6pC (C:)
    mkhhhhhhpmghmqtlifldleatglpssrpevtelcllavhrralentsisqghpppvp
    rpprvvdklslciapgkacspgaseitglskaelevqgrqrfddnlaillraflqrqpqp
    cclvahngdrydfpllqtelarlstpspldgtfcvdsiaalkaleqasspsgngsrksys
    lgsiytrlywqaptdshtaegdvltllsicqwkpqallqwvdeharpfstvkpmygtpat
    tgttnlr
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b6pC (C:)
    ghmqtlifldleatglpssrpevtelcllavhrralentsisqghpppvprpprvvdkls
    lciapgkacspgaseitglskaelevqgrqrfddnlaillraflqrqpqpcclvahngdr
    ydfpllqtelarlstpspldgtfcvdsiaalkaleqaksyslgsiytrlywqaptdshta
    egdvltllsicqwkpqallqwvdeharpfstvkpmyg
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3b6pD (D:)
    mkhhhhhhpmghmqtlifldleatglpssrpevtelcllavhrralentsisqghpppvp
    rpprvvdklslciapgkacspgaseitglskaelevqgrqrfddnlaillraflqrqpqp
    cclvahngdrydfpllqtelarlstpspldgtfcvdsiaalkaleqasspsgngsrksys
    lgsiytrlywqaptdshtaegdvltllsicqwkpqallqwvdeharpfstvkpmygtpat
    tgttnlr
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b6pD (D:)
    ghmqtlifldleatglpssrpevtelcllavhrralentsisqghpppvprpprvvdkls
    lciapgkacspgaseitglskaelevqgrqrfddnlaillraflqrqpqpcclvahngdr
    ydfpllqtelarlstpspldgtfcvdsiaalkaleqaksyslgsiytrlywqaptdshta
    egdvltllsicqwkpqallqwvdeharpfstvkpmyg