PDB entry 3b1d

View 3b1d on RCSB PDB site
Description: Crystal structure of betaC-S lyase from Streptococcus anginosus in complex with L-serine: External aldimine form
Class: lyase
Keywords: lyase
Deposited on 2011-06-29, released 2012-06-27
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-01-22, with a file datestamp of 2014-01-17.
Experiment type: XRAY
Resolution: 1.66 Å
R-factor: 0.152
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: BetaC-S lyase
    Species: Streptococcus anginosus [TaxId:1328]
    Gene: lcd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3b1da_
  • Chain 'B':
    Compound: BetaC-S lyase
    Species: Streptococcus anginosus [TaxId:1328]
    Gene: lcd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3b1db_
  • Chain 'C':
    Compound: BetaC-S lyase
    Species: Streptococcus anginosus [TaxId:1328]
    Gene: lcd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3b1dc_
  • Chain 'D':
    Compound: BetaC-S lyase
    Species: Streptococcus anginosus [TaxId:1328]
    Gene: lcd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3b1dd_
  • Heterogens: PLP, PLS, EPE, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3b1dA (A:)
gplgsskynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeql
vygytyasdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlins
pvyppfarsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrv
werevleqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktf
niagtknsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavle
eniqfaveyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdy
gsegelharlniaapkslveeickrivcclpk

    Sequence, based on observed residues (ATOM records): (download) 
    >3b1dA (A:)
skynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeqlvygyt
yasdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlinspvypp
farsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrvwerev
leqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktfniagt
knsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavleeniqf
aveyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdygsege
lharlniaapkslveeickrivcclpk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3b1dB (B:)
gplgsskynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeql
vygytyasdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlins
pvyppfarsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrv
werevleqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktf
niagtknsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavle
eniqfaveyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdy
gsegelharlniaapkslveeickrivcclpk

    Sequence, based on observed residues (ATOM records): (download) 
    >3b1dB (B:)
skynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeqlvygyt
yasdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlinspvypp
farsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrvwerev
leqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktfniagt
knsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavleeniqf
aveyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdygsege
lharlniaapkslveeickrivcclpk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3b1dC (C:)
gplgsskynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeql
vygytyasdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlins
pvyppfarsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrv
werevleqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktf
niagtknsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavle
eniqfaveyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdy
gsegelharlniaapkslveeickrivcclpk

    Sequence, based on observed residues (ATOM records): (download) 
    >3b1dC (C:)
kynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeqlvygyty
asdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlinspvyppf
arsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrvwerevl
eqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktfniagtk
nsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavleeniqfa
veyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdygsegel
harlniaapkslveeickrivcclpk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3b1dD (D:)
gplgsskynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeql
vygytyasdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlins
pvyppfarsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrv
werevleqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktf
niagtknsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavle
eniqfaveyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdy
gsegelharlniaapkslveeickrivcclpk

    Sequence, based on observed residues (ATOM records): (download) 
    >3b1dD (D:)
kynfqtapnrlshhtykwketetdpqllpawiadmdfevmpevkqaihdyaeqlvygyty
asdellqavldweksehqysfdkedivfvegvvpaisiaiqaftkegeavlinspvyppf
arsvrlnnrklvsnslkeenglfqidfeqlendivendvklyllcnphnpggrvwerevl
eqighlcqkhhvilvsdeihqdltlfghehvsfntvspdfkdfalvlssatktfniagtk
nsyaiienptlcaqfkhqqlvnnhhevsslgyiatetayrygkpwlvalkavleeniqfa
veyfaqeaprlkvmkpqgtyliwldfsdygltddalftllhdqakvilnrgsdygsegel
harlniaapkslveeickrivcclpk