PDB entry 3akd

View 3akd on RCSB PDB site
Description: Crystal structure of CMP kinase in complex with CDP from Thermus thermophilus HB8
Class: transferase
Keywords: CMP kinase, CDP complex, open conformation, nucleotide metabolism, TRANSFERASE
Deposited on 2010-07-12, released 2011-07-06
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-07-06, with a file datestamp of 2011-07-01.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.21
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cytidylate kinase
    Species: Thermus thermophilus [TaxId:300852]
    Gene: TTHA0458
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3akda_
  • Heterogens: CDP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3akdA (A:)
mrgivtidgpsasgkssvarrvaaalgvpylssgllyraaaflalragvdpgdeegllal
leglgvrllaqaegnrvladgedltsflhtpevdrvvsavarlpgvrawvnrrlkevppp
fvaegrdmgtavfpeaahkfyltaspevrawrrarerpqayeevlrdllrrderdkaqsa
papdalvldtggmtldevvawvlahirr

    Sequence, based on observed residues (ATOM records): (download) 
    >3akdA (A:)
mrgivtidgpsasgkssvarrvaaalgvpylssgllyraaaflalragvdpgdeegllal
leglgvrllaqaegnrvladgedltsflhtpevdrvvsavarlpgvrawvnrrlkevppp
fvaegrdmgtavfpeaahkfyltaspevrawrrarerpqayeevlrdllrrdsapapdal
vldtggmtldevvawvlahirr