PDB entry 3adn

View 3adn on RCSB PDB site
Description: Crystal Structure of Spermidine Synthase from E. coli.
Class: transferase
Keywords: aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase
Deposited on 2010-01-25, released 2010-03-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2010-08-18, with a file datestamp of 2010-08-13.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.268
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3adna_
  • Chain 'B':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3adnb_
  • Chain 'C':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3adnc_
  • Chain 'D':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3adnd_
  • Chain 'E':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3adne_
  • Chain 'F':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3adnf_
  • Chain 'G':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3adng_
  • Chain 'H':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3adnh_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3adnA (A:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3adnA (A:)
qwhetlhdqfgqyfavdnvlyheqdliifenaafgrvmaldgvvqtterdefiyhemmth
vpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhnagsy
ddprfklviddgvnqtsqtfdviisdcftsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarflkcryynp
aihtaafalpqylqdalasq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3adnB (B:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3adnB (B:)
qwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvqtterdefiyhe
mmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhn
agsyddprfklvivnqtsqtfdviisdctsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarlkcryynpa
ihtaafalpqylqda

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3adnC (C:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3adnC (C:)
qwhetlhdqfgqyfavdnvlyheqdliifenaafgrvmaldgvvqtterdefiyhemmth
vpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhnagsy
ddprfklviddgvnqtsqtfdviisdcftsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarflkcryynp
aihtaafalpqylqdalasq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3adnD (D:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3adnD (D:)
qwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvqtterdefiyhe
mmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhn
agsyddprfklvivnqtsqtfdviisdctsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarlkcryynpa
ihtaafalpqylqda

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3adnE (E:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3adnE (E:)
qwhetlhdqfgqyfavdnvlyheqdliifenaafgrvmaldgvvqtterdefiyhemmth
vpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhnagsy
ddprfklviddgvnqtsqtfdviisdcftsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarflkcryynp
aihtaafalpqylqdalasq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3adnF (F:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3adnF (F:)
qwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvqtterdefiyhe
mmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhn
agsyddprfklvivnqtsqtfdviisdctsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarlkcryynpa
ihtaafalpqylqda

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3adnG (G:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3adnG (G:)
qwhetlhdqfgqyfavdnvlyheqdliifenaafgrvmaldgvvqtterdefiyhemmth
vpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhnagsy
ddprfklviddgvnqtsqtfdviisdcftsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarflkcryynp
aihtaafalpqylqdalasq

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3adnH (H:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3adnH (H:)
qwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvqtterdefiyhe
mmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhn
agsyddprfklvivnqtsqtfdviisdctsafyegckrclnpggifvaqngvcflqqeea
idshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarlkcryynpa
ihtaafalpqylqda