PDB entry 3a6n
View 3a6n on RCSB PDB site
Description: The nucleosome containing a testis-specific histone variant, human H3T
Class: structural protein/DNA
Keywords: histone-fold, DNA-binding protein, Chromosomal protein, Citrullination, DNA-binding, Methylation, Nucleosome core, Nucleus, Phosphoprotein, Isopeptide bond, Antibiotic, Antimicrobial, STRUCTURAL PROTEIN-DNA COMPLEX
Deposited on
2009-09-04, released
2010-05-26
The last revision prior to the SCOPe 2.08 freeze date was dated
2012-07-18, with a file datestamp of
2012-07-13.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.228
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Histone H3.1t
Species: Homo sapiens [TaxId:9606]
Gene: H3T
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3a6na_ - Chain 'B':
Compound: histone h4
Species: Homo sapiens [TaxId:9606]
Gene: H4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3a6nb_ - Chain 'C':
Compound: Histone H2A type 1-B/E
Species: Homo sapiens [TaxId:9606]
Gene: H2A
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3a6nc_ - Chain 'D':
Compound: Histone H2B type 1-J
Species: Homo sapiens [TaxId:9606]
Gene: H2B
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3a6nd_ - Chain 'E':
Compound: Histone H3.1t
Species: Homo sapiens [TaxId:9606]
Gene: H3T
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3a6ne_ - Chain 'F':
Compound: histone h4
Species: Homo sapiens [TaxId:9606]
Gene: H4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3a6nf_ - Chain 'G':
Compound: Histone H2A type 1-B/E
Species: Homo sapiens [TaxId:9606]
Gene: H2A
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3a6ng_ - Chain 'H':
Compound: Histone H2B type 1-J
Species: Homo sapiens [TaxId:9606]
Gene: H2B
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3a6nh_ - Chain 'I':
Compound: 146-mer DNA
- Chain 'J':
Compound: 146-mer DNA
- Heterogens: CL, MN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3a6nA (A:)
gshmartkqtarkstggkaprkqlatkvarksapatggvkkphryrpgtvalreirryqk
stellirklpfqrlmreiaqdfktdlrfqssavmalqeacesylvglfedtnlcvihakr
vtimpkdiqlarrirgera
Sequence, based on observed residues (ATOM records): (download)
>3a6nA (A:)
phryrpgtvalreirryqkstellirklpfqrlmreiaqdfktdlrfqssavmalqeace
sylvglfedtnlcvihakrvtimpkdiqlarrirger
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3a6nB (B:)
gshmsgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrg
vlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
Sequence, based on observed residues (ATOM records): (download)
>3a6nB (B:)
lrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrktv
tamdvvyalkrqgrtlygfgg
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3a6nC (C:)
gshmsgrgkqggkarakaktrssraglqfpvgrvhrllrkgnyservgagapvylaavle
yltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavll
pkkteshhkakgk
Sequence, based on observed residues (ATOM records): (download)
>3a6nC (C:)
aktrssraglqfpvgrvhrllrkgnyservgagapvylaavleyltaeilelagnaardn
kktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3a6nD (D:)
gshmpepaksapapkkgskkavtkaqkkdgkkrkrsrkesysiyvykvlkqvhpdtgiss
kamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtk
avtkytsak
Sequence, based on observed residues (ATOM records): (download)
>3a6nD (D:)
rsrkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstit
sreiqtavrlllpgelakhavsegtkavtkytsa
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3a6nE (E:)
gshmartkqtarkstggkaprkqlatkvarksapatggvkkphryrpgtvalreirryqk
stellirklpfqrlmreiaqdfktdlrfqssavmalqeacesylvglfedtnlcvihakr
vtimpkdiqlarrirgera
Sequence, based on observed residues (ATOM records): (download)
>3a6nE (E:)
phryrpgtvalreirryqkstellirklpfqrlmreiaqdfktdlrfqssavmalqeace
sylvglfedtnlcvihakrvtimpkdiqlarrirgera
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3a6nF (F:)
gshmsgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrg
vlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
Sequence, based on observed residues (ATOM records): (download)
>3a6nF (F:)
rkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakr
ktvtamdvvyalkrqgrtlygfgg
- Chain 'G':
Sequence, based on SEQRES records: (download)
>3a6nG (G:)
gshmsgrgkqggkarakaktrssraglqfpvgrvhrllrkgnyservgagapvylaavle
yltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavll
pkkteshhkakgk
Sequence, based on observed residues (ATOM records): (download)
>3a6nG (G:)
ktrssraglqfpvgrvhrllrkgnyservgagapvylaavleyltaeilelagnaardnk
ktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk
- Chain 'H':
Sequence, based on SEQRES records: (download)
>3a6nH (H:)
gshmpepaksapapkkgskkavtkaqkkdgkkrkrsrkesysiyvykvlkqvhpdtgiss
kamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtk
avtkytsak
Sequence, based on observed residues (ATOM records): (download)
>3a6nH (H:)
srkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstits
reiqtavrlllpgelakhavsegtkavtkytsa
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.