PDB entry 3a2w

View 3a2w on RCSB PDB site
Description: Peroxiredoxin (C50S) from Aeropytum pernix K1 (peroxide-bound form)
Class: Oxidoreductase
Keywords: peroxiredoxin, thioredoxin peroxidase, hydrogen peroxide, Antioxidant, Oxidoreductase, Redox-active center
Deposited on 2009-06-04, released 2009-10-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-01-22, with a file datestamp of 2014-01-17.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.202
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Probable peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Gene: APE_2278
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0 (0-End)
      • engineered (48)
    Domains in SCOPe 2.08: d3a2wa_
  • Chain 'B':
    Compound: Probable peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Gene: APE_2278
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0 (0-End)
      • engineered (48)
    Domains in SCOPe 2.08: d3a2wb_
  • Chain 'C':
    Compound: Probable peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Gene: APE_2278
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0 (0-End)
      • engineered (48)
    Domains in SCOPe 2.08: d3a2wc_
  • Chain 'D':
    Compound: Probable peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Gene: APE_2278
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0 (0-End)
      • engineered (48)
    Domains in SCOPe 2.08: d3a2wd_
  • Chain 'E':
    Compound: Probable peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Gene: APE_2278
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0 (0-End)
      • engineered (48)
    Domains in SCOPe 2.08: d3a2we_
  • Chain 'F':
    Compound: Probable peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Gene: APE_2278
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0 (0-End)
      • engineered (48)
    Domains in SCOPe 2.08: d3a2wf_
  • Chain 'G':
    Compound: Probable peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Gene: APE_2278
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0 (0-End)
      • engineered (48)
    Domains in SCOPe 2.08: d3a2wg_
  • Chain 'H':
    Compound: Probable peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Gene: APE_2278
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0 (0-End)
      • engineered (48)
    Domains in SCOPe 2.08: d3a2wh_
  • Chain 'I':
    Compound: Probable peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Gene: APE_2278
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0 (0-End)
      • engineered (48)
    Domains in SCOPe 2.08: d3a2wi_
  • Chain 'J':
    Compound: Probable peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Gene: APE_2278
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0 (0-End)
      • engineered (48)
    Domains in SCOPe 2.08: d3a2wj_
  • Heterogens: GOL, PER, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3a2wA (A:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3a2wA (A:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeea
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3a2wB (B:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3a2wB (B:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeea
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3a2wC (C:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3a2wC (C:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yee
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3a2wD (D:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3a2wD (D:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeea
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3a2wE (E:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3a2wE (E:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yee
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3a2wF (F:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3a2wF (F:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeea
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3a2wG (G:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3a2wG (G:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yee
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3a2wH (H:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3a2wH (H:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeea
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >3a2wI (I:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3a2wI (I:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeea
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >3a2wJ (J:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3a2wJ (J:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvsttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    yeea