PDB entry 3a1q

View 3a1q on RCSB PDB site
Description: Crystal structure of the mouse RAP80 UIMs in complex with Lys63-linked di-ubiquitin
Class: gene regulation/signaling protein
Keywords: protein complex, Cytoplasm, Nucleus, Phosphoprotein, Ubl conjugation, Transcription regulation, GENE REGULATION/SIGNALING PROTEIN COMPLEX
Deposited on 2009-04-21, released 2009-07-21
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-09-01, with a file datestamp of 2009-08-28.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.216
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin
    Species: Mus musculus [TaxId:10090]
    Gene: Rps27a, Uba80, Ubcep1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3a1qa_
  • Chain 'B':
    Compound: Ubiquitin
    Species: Mus musculus [TaxId:10090]
    Gene: Rps27a, Uba80, Ubcep1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62991 (0-75)
      • engineered (62)
    Domains in SCOPe 2.06: d3a1qb_
  • Chain 'C':
    Compound: Ubiquitin interaction motif-containing protein 1
    Species: Mus musculus [TaxId:10090]
    Gene: Uimc1, Rip110, Rxrip110
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5U5Q9 (4-44)
      • expression tag (0-3)
  • Chain 'D':
    Compound: Ubiquitin
    Species: Mus musculus [TaxId:10090]
    Gene: Rps27a, Uba80, Ubcep1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3a1qd_
  • Chain 'E':
    Compound: Ubiquitin
    Species: Mus musculus [TaxId:10090]
    Gene: Rps27a, Uba80, Ubcep1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62991 (0-75)
      • engineered (62)
    Domains in SCOPe 2.06: d3a1qe_
  • Chain 'F':
    Compound: Ubiquitin interaction motif-containing protein 1
    Species: Mus musculus [TaxId:10090]
    Gene: Uimc1, Rip110, Rxrip110
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5U5Q9 (4-44)
      • expression tag (0-3)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3a1qA (A:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrggd
    

    Sequence, based on observed residues (ATOM records): (download)
    >3a1qA (A:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3a1qB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqrestlhlvlrlrgg
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3a1qD (D:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrggd
    

    Sequence, based on observed residues (ATOM records): (download)
    >3a1qD (D:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlr
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3a1qE (E:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqrestlhlvlrlrgg
    

  • Chain 'F':
    No sequence available.