PDB entry 2yy5

View 2yy5 on RCSB PDB site
Description: Crystal Structure of tryptophanyl-tRNA synthetase from Mycoplasma pneumoniae
Class: ligase
Keywords: Aminoaccyl tRNA synthetase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, LIGASE
Deposited on 2007-04-27, released 2008-04-29
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: 0.192
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tryptophanyl-tRNA synthetase
    Species: Mycoplasma pneumoniae [TaxId:272634]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P75510 (Start-347)
      • engineered (241)
    Domains in SCOPe 2.03: d2yy5a_
  • Chain 'B':
    Compound: Tryptophanyl-tRNA synthetase
    Species: Mycoplasma pneumoniae [TaxId:272634]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P75510 (2-347)
      • engineered (241)
    Domains in SCOPe 2.03: d2yy5b_
  • Chain 'C':
    Compound: Tryptophanyl-tRNA synthetase
    Species: Mycoplasma pneumoniae [TaxId:272634]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P75510 (Start-347)
      • engineered (241)
    Domains in SCOPe 2.03: d2yy5c_
  • Chain 'D':
    Compound: Tryptophanyl-tRNA synthetase
    Species: Mycoplasma pneumoniae [TaxId:272634]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P75510 (2-347)
      • engineered (241)
    Domains in SCOPe 2.03: d2yy5d_
  • Heterogens: SO4, WSA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2yy5A (A:)
ghmmkraltgiqasgkqhlgnylgvmqslielqeqcqlfvfvadlhsitvdfqpqalkqn
nfdlvrtllavgldpqkaclflqsdllehsmmgylmmvqsnlgelqrmtqfkakkaeqtr
npngtlniptglltypalmagdillyqpdivpvgndqkqhleltrdlaqriqkkfklklr
lpqfvqnkdtnrimdlfdptkkmskssknqngviylddpkevvvkkirqattdsfnkirf
asktqpgvtnmltilkallkepvnqsltnqlgndleayfstksyldlknalteatvnllv
niqrkreqisreqvfnclqagknqaqatarttlalfydgfglgsqnik

    Sequence, based on observed residues (ATOM records): (download) 
    >2yy5A (A:)
mkraltgiqasgkqhlgnylgvmqslielqeqcqlfvfvadlhsitvdfqpqalkqnnfd
lvrtllavgldpqkaclflqsdllehsmmgylmmvqsnlgelqrmtqfkakkniptgllt
ypalmagdillyqpdivpvgndqkqhleltrdlaqriqkkfklklrlpqfvqnkdtnrim
dlfdptkkmskssknqngviylddpkevvvkkirqattdsfnkirfasktqpgvtnmlti
lkallkepvnqsltnqlgndleayfstksyldlknalteatvnllvniqrkreqisreqv
fnclqagknqaqatarttlalfydgfglgsqnik

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2yy5B (B:)
ghmmkraltgiqasgkqhlgnylgvmqslielqeqcqlfvfvadlhsitvdfqpqalkqn
nfdlvrtllavgldpqkaclflqsdllehsmmgylmmvqsnlgelqrmtqfkakkaeqtr
npngtlniptglltypalmagdillyqpdivpvgndqkqhleltrdlaqriqkkfklklr
lpqfvqnkdtnrimdlfdptkkmskssknqngviylddpkevvvkkirqattdsfnkirf
asktqpgvtnmltilkallkepvnqsltnqlgndleayfstksyldlknalteatvnllv
niqrkreqisreqvfnclqagknqaqatarttlalfydgfglgsqnik

    Sequence, based on observed residues (ATOM records): (download) 
    >2yy5B (B:)
mmkraltgiqasgkqhlgnylgvmqslielqeqcqlfvfvadlhsitvdfqpqalkqnnf
dlvrtllavgldpqkaclflqsdllehsmmgylmmvqsnlgelqrmtqfkakkaeqtrnp
ngtlniptglltypalmagdillyqpdivpvgndqkqhleltrdlaqriqkkfklklrlp
qfvqnkdtnrimdlfdptkkmskssknqngviylddpkevvvkkirqattdsfnkirfas
ktqpgvtnmltilkallkepvnqsltnqlgndleayfstksyldlknalteatvnllvni
qrkreqisreqvfnclqagknqaqatarttlalfydgfglgsqnik

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2yy5C (C:)
ghmmkraltgiqasgkqhlgnylgvmqslielqeqcqlfvfvadlhsitvdfqpqalkqn
nfdlvrtllavgldpqkaclflqsdllehsmmgylmmvqsnlgelqrmtqfkakkaeqtr
npngtlniptglltypalmagdillyqpdivpvgndqkqhleltrdlaqriqkkfklklr
lpqfvqnkdtnrimdlfdptkkmskssknqngviylddpkevvvkkirqattdsfnkirf
asktqpgvtnmltilkallkepvnqsltnqlgndleayfstksyldlknalteatvnllv
niqrkreqisreqvfnclqagknqaqatarttlalfydgfglgsqnik

    Sequence, based on observed residues (ATOM records): (download) 
    >2yy5C (C:)
mkraltgiqasgkqhlgnylgvmqslielqeqcqlfvfvadlhsitvdfqpqalkqnnfd
lvrtllavgldpqkaclflqsdllehsmmgylmmvqsnlgelqrmtqfkakkalniptgl
ltypalmagdillyqpdivpvgndqkqhleltrdlaqriqkkfklklrlpqfvqnkdtnr
imdlfdptkkmskssknqngviylddpkevvvkkirqattdsfnkirfasktqpgvtnml
tilkallkepvnqsltnqlgndleayfstksyldlknalteatvnllvniqrkreqisre
qvfnclqagknqaqatarttlalfydgfglgsqnik

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2yy5D (D:)
ghmmkraltgiqasgkqhlgnylgvmqslielqeqcqlfvfvadlhsitvdfqpqalkqn
nfdlvrtllavgldpqkaclflqsdllehsmmgylmmvqsnlgelqrmtqfkakkaeqtr
npngtlniptglltypalmagdillyqpdivpvgndqkqhleltrdlaqriqkkfklklr
lpqfvqnkdtnrimdlfdptkkmskssknqngviylddpkevvvkkirqattdsfnkirf
asktqpgvtnmltilkallkepvnqsltnqlgndleayfstksyldlknalteatvnllv
niqrkreqisreqvfnclqagknqaqatarttlalfydgfglgsqnik

    Sequence, based on observed residues (ATOM records): (download) 
    >2yy5D (D:)
mmkraltgiqasgkqhlgnylgvmqslielqeqcqlfvfvadlhsitvdfqpqalkqnnf
dlvrtllavgldpqkaclflqsdllehsmmgylmmvqsnlgelqrmtqfkakkaeqtrnp
ngtlniptglltypalmagdillyqpdivpvgndqkqhleltrdlaqriqkkfklklrlp
qfvqnkdtnrimdlfdptkkmskssknqngviylddpkevvvkkirqattdsfnkirfas
ktqpgvtnmltilkallkepvnqsltnqlgndleayfstksyldlknalteatvnllvni
qrkreqisreqvfnclqagknqaqatarttlalfydgfglgsqnik