PDB entry 2yxd

View 2yxd on RCSB PDB site
Description: Crystal Structure of Cobalamin biosynthesis precorrin 8W decarboxylase (cbiT)
Class: transferase
Keywords: Alpha and beta protein (a/b) Class, Methyltransferase superfamily, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE
Deposited on 2007-04-26, released 2007-10-30
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.202
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating]
    Species: METHANOCALDOCOCCUS JANNASCHII [TaxId:243232]
    Gene: cbiT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2yxda_
  • Chain 'B':
    Compound: Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating]
    Species: METHANOCALDOCOCCUS JANNASCHII [TaxId:243232]
    Gene: cbiT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2yxdb_
  • Heterogens: SO4, MES, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2yxdA (A:)
mkymipdeefirregvpitkeeiravsigklnlnkddvvvdvgcgsggmtveiakrckfv
yaidyldgaievtkqnlakfnikncqiikgraedvldklefnkafiggtkniekiieild
kkkinhivantivlenaakiinefesrgynvdavnvfisyakkipsghmflaknpitiik
avr

    Sequence, based on observed residues (ATOM records): (download) 
    >2yxdA (A:)
mipdeefirregvpitkeeiravsigklnlnkddvvvdvgcgsggmtveiakrckfvyai
dyldgaievtkqnlakfnikncqiikgraedvldklefnkafiggtkniekiieildkkk
inhivantivlenaakiinefesrgynvdavnvfisyakkipsghmflaknpitiikavr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2yxdB (B:)
mkymipdeefirregvpitkeeiravsigklnlnkddvvvdvgcgsggmtveiakrckfv
yaidyldgaievtkqnlakfnikncqiikgraedvldklefnkafiggtkniekiieild
kkkinhivantivlenaakiinefesrgynvdavnvfisyakkipsghmflaknpitiik
avr

    Sequence, based on observed residues (ATOM records): (download) 
    >2yxdB (B:)
mipdeefirregvpitkeeiravsigklnlnkddvvvdvgcgsggmtveiakrckfvyai
dyldgaievtkqnlakfnikncqiikgraedvldklefnkafiggtkniekiieildkkk
inhivantivlenaakiinefesrgynvdavnvfisyakkipsghmflaknpitiikavr