PDB entry 2yvl

View 2yvl on RCSB PDB site
Description: Crystal structure of tRNA (m1A58) methyltransferase TrmI from Aquifex aeolicus
Class: transferase
Keywords: tRNA, methyltransferase, S-adenosylmethionine, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE
Deposited on 2007-04-13, released 2008-04-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.196
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hypothetical protein
    Species: Aquifex aeolicus [TaxId:224324]
    Gene: aq_311
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yvla_
  • Chain 'B':
    Compound: hypothetical protein
    Species: Aquifex aeolicus [TaxId:224324]
    Gene: aq_311
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yvlb_
  • Chain 'C':
    Compound: hypothetical protein
    Species: Aquifex aeolicus [TaxId:224324]
    Gene: aq_311
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yvlc_
  • Chain 'D':
    Compound: hypothetical protein
    Species: Aquifex aeolicus [TaxId:224324]
    Gene: aq_311
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yvld_
  • Heterogens: SAM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2yvlA (A:)
mnsfkegeyvlirfgekkflrkllpkqslsvkksvlkfdevigkpegvkingfevyrptl
eeiillgferktqiiypkdsfyialklnlnkekrvlefgtgsgallavlsevagevwtfe
aveefyktaqknlkkfnlgknvkffnvdfkdaevpegifhaafvdvrepwhylekvhksl
megapvgfllptanqvikllesienyfgnlevveilhrhyktiserfrpedqmvahtayl
vfgrklkt

    Sequence, based on observed residues (ATOM records): (download) 
    >2yvlA (A:)
nsfkegeyvlirfgekkflrkllpkqslsvkksvlkfdevigkpegvkingfevyrptle
eiillgferktqiiypkdsfyialklnlnkekrvlefgtgsgallavlsevagevwtfea
veefyktaqknlkkfnlgknvkffnvdfkdaevpegifhaafvdvrepwhylekvhkslm
egapvgfllptanqvikllesienyfgnlevveilhrhyktiserfrpedqmvahtaylv
fgrklkt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2yvlB (B:)
mnsfkegeyvlirfgekkflrkllpkqslsvkksvlkfdevigkpegvkingfevyrptl
eeiillgferktqiiypkdsfyialklnlnkekrvlefgtgsgallavlsevagevwtfe
aveefyktaqknlkkfnlgknvkffnvdfkdaevpegifhaafvdvrepwhylekvhksl
megapvgfllptanqvikllesienyfgnlevveilhrhyktiserfrpedqmvahtayl
vfgrklkt

    Sequence, based on observed residues (ATOM records): (download) 
    >2yvlB (B:)
nsfkegeyvlirfgekkflrkllpkqslsvkksvlkfdevigkpegvkingfevyrptle
eiillgferktqiiypkdsfyialklnlnkekrvlefgtgsgallavlsevagevwtfea
veefyktaqknlkkfnlgknvkffnvdfkdaevpegifhaafvdvrepwhylekvhkslm
egapvgfllptanqvikllesienyfgnlevveilhrhyktiserfrpedqmvahtaylv
fgrklkt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2yvlC (C:)
mnsfkegeyvlirfgekkflrkllpkqslsvkksvlkfdevigkpegvkingfevyrptl
eeiillgferktqiiypkdsfyialklnlnkekrvlefgtgsgallavlsevagevwtfe
aveefyktaqknlkkfnlgknvkffnvdfkdaevpegifhaafvdvrepwhylekvhksl
megapvgfllptanqvikllesienyfgnlevveilhrhyktiserfrpedqmvahtayl
vfgrklkt

    Sequence, based on observed residues (ATOM records): (download) 
    >2yvlC (C:)
nsfkegeyvlirfgekkflrkllpkqslsvkksvlkfdevigkpegvkingfevyrptle
eiillgferktqiiypkdsfyialklnlnkekrvlefgtgsgallavlsevagevwtfea
veefyktaqknlkkfnlgknvkffnvdfkdaevpegifhaafvdvrepwhylekvhkslm
egapvgfllptanqvikllesienyfgnlevveilhrhyktiserfrpedqmvahtaylv
fgrklkt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2yvlD (D:)
mnsfkegeyvlirfgekkflrkllpkqslsvkksvlkfdevigkpegvkingfevyrptl
eeiillgferktqiiypkdsfyialklnlnkekrvlefgtgsgallavlsevagevwtfe
aveefyktaqknlkkfnlgknvkffnvdfkdaevpegifhaafvdvrepwhylekvhksl
megapvgfllptanqvikllesienyfgnlevveilhrhyktiserfrpedqmvahtayl
vfgrklkt

    Sequence, based on observed residues (ATOM records): (download) 
    >2yvlD (D:)
nsfkegeyvlirfgekkflrkllpkqslsvkksvlkfdevigkpegvkingfevyrptle
eiillgferktqiiypkdsfyialklnlnkekrvlefgtgsgallavlsevagevwtfea
veefyktaqknlkkfnlgknvkffnvdfkdaevpegifhaafvdvrepwhylekvhkslm
egapvgfllptanqvikllesienyfgnlevveilhrhyktiserfrpedqmvahtaylv
fgrklkt