PDB entry 2ypd

View 2ypd on RCSB PDB site
Description: Crystal structure of the Jumonji domain of human Jumonji domain containing 1C protein
Class: oxidoreductase
Keywords: oxidoreductase
Deposited on 2012-10-30, released 2012-12-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-24, with a file datestamp of 2018-01-19.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: probable jmjc domain-containing histone demethylation prot ein 2c
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15652 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.08: d2ypda1, d2ypda2
  • Chain 'B':
    Compound: probable jmjc domain-containing histone demethylation prot ein 2c
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15652 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.08: d2ypdb1, d2ypdb2
  • Heterogens: EMT, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ypdA (A:)
miphswicekhilwlkdyknssnwklfkecwkqgqpavvsgvhkkmnislwkaesisldf
gdhqadllnckdsiisnanvkefwdgfeevskrqknksgetvvlklkdwpsgedfktmmp
aryedllkslplpeycnpegkfnlashlpgffvrpdlgprlcsaygvvaakdhdigttnl
hievsdvvnilvyvgiakgngilskagilkkfeeedlddilrkrlkdsseipgalwhiya
gkdvdkireflqkiskeqglevlpehdpirdqswyvnkklrqrlleeygvrtctliqflg
daivlpagalhqvqnfhsciqvtedfvspehlvesfhltqelrllkeeinyddklqvkni
lyhavkemvralkihedevedmeenaenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >2ypdA (A:)
miphswicekhilwlkdyknssnwklfkecwkqgqpavvsgvhkkmnislwkaesisldf
gdhqadllnckdsiisnanvkefwdgfeevskretvvlklkdwpsgedfktmmparyedl
lkslplpeycnpegkfnlashlpgffvrgprlcsaygvvaakdhdigttnlhievsdvvn
ilvyvgiakgngilskagilkkfeeedlddilrkrlkdsseipgalwhiyagkdvdkire
flqkiskeqghdpirdqswyvnkklrqrlleeygvrtctliqflgdaivlpagalhqvqn
fhsciqvtedfvspehlvesfhltqel

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ypdB (B:)
miphswicekhilwlkdyknssnwklfkecwkqgqpavvsgvhkkmnislwkaesisldf
gdhqadllnckdsiisnanvkefwdgfeevskrqknksgetvvlklkdwpsgedfktmmp
aryedllkslplpeycnpegkfnlashlpgffvrpdlgprlcsaygvvaakdhdigttnl
hievsdvvnilvyvgiakgngilskagilkkfeeedlddilrkrlkdsseipgalwhiya
gkdvdkireflqkiskeqglevlpehdpirdqswyvnkklrqrlleeygvrtctliqflg
daivlpagalhqvqnfhsciqvtedfvspehlvesfhltqelrllkeeinyddklqvkni
lyhavkemvralkihedevedmeenaenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >2ypdB (B:)
miphswicekhilwlkdyknssnwklfkecwkqgqpavvsgvhkkmnislwkaesisldf
gdhqadllnckdsiisnanvkefwdgfeevskretvvlklkdwpsgedfktmmparyedl
lkslplpeycnpegkfnlashlpgffvgprlcsaygvvaakdhdigttnlhievsdvvni
lvyvgiakgngilskagilkkfeeedlddilrkrlkdsseipgalwhiyagkdvdkiref
lqkiskeqghdpirdqswyvnkklrqrlleeygvrtctliqflgdaivlpagalhqvqnf
hsciqvtedfvspehlvesfhltqel