PDB entry 2yof

View 2yof on RCSB PDB site
Description: Plasmodium falciparum thymidylate kinase in complex with a (thio)urea- beta-deoxythymidine inhibitor
Class: transferase
Keywords: transferase, malaria
Deposited on 2012-10-24, released 2013-07-24
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-07-24, with a file datestamp of 2013-07-19.
Experiment type: XRAY
Resolution: 1.82 Å
R-factor: 0.19067
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: thymidylate kinase
    Species: PLASMODIUM FALCIPARUM [TaxId:36329]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2yofa_
  • Chain 'B':
    Compound: thymidylate kinase
    Species: PLASMODIUM FALCIPARUM [TaxId:36329]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2yofb_
  • Chain 'C':
    Compound: thymidylate kinase
    Species: PLASMODIUM FALCIPARUM [TaxId:36329]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2yofc_
  • Heterogens: 74W, ACT, TAM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2yofA (A:)
    mtddkkkgkfivfegldrsgkstqskllveylknnnvevkhlyfpnretgigqiiskylk
    mensmsnetihllfsanrwehmneikslllkgiwvvcdryaysgvayssgalnlnktwcm
    npdqglikpdvvfylnvppnyaqnrsdygeeiyekvetqkkiyetykhfahedywinida
    trkiedihndivkevtkikvepeefnflws
    

    Sequence, based on observed residues (ATOM records): (download)
    >2yofA (A:)
    ddkkkgkfivfegldrsgkstqskllveylknnnvevkhlyfpnretgigqiiskylkme
    nsmsnetihllfsanrwehmneikslllkgiwvvcdryaysgvayssgalnlnktwcmnp
    dqglikpdvvfylnvppnyeeiyekvetqkkiyetykhfahedywinidatrkiedihnd
    ivkevtkikvepeefnflws
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2yofB (B:)
    mtddkkkgkfivfegldrsgkstqskllveylknnnvevkhlyfpnretgigqiiskylk
    mensmsnetihllfsanrwehmneikslllkgiwvvcdryaysgvayssgalnlnktwcm
    npdqglikpdvvfylnvppnyaqnrsdygeeiyekvetqkkiyetykhfahedywinida
    trkiedihndivkevtkikvepeefnflws
    

    Sequence, based on observed residues (ATOM records): (download)
    >2yofB (B:)
    mtddkkkgkfivfegldrsgkstqskllveylknnnvevkhlyfpnretgigqiiskylk
    mensmsnetihllfsanrwehmneikslllkgiwvvcdryaysgvayssgalnlnktwcm
    npdqglikpdvvfylnvppnyaqeeiyekvetqkkiyetykhfahedywinidatrkied
    ihndivkevtkikvepeefnflws
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2yofC (C:)
    mtddkkkgkfivfegldrsgkstqskllveylknnnvevkhlyfpnretgigqiiskylk
    mensmsnetihllfsanrwehmneikslllkgiwvvcdryaysgvayssgalnlnktwcm
    npdqglikpdvvfylnvppnyaqnrsdygeeiyekvetqkkiyetykhfahedywinida
    trkiedihndivkevtkikvepeefnflws
    

    Sequence, based on observed residues (ATOM records): (download)
    >2yofC (C:)
    ddkkkgkfivfegldrsgkstqskllveylknnnvevkhlyfpnretgigqiiskylkme
    nsmsnetihllfsanrwehmneikslllkgiwvvcdryaysgvayssgalnlnktwcmnp
    dqglikpdvvfylnvppnyaqnrsdygeeiyekvetqkkiyetykhfahedywinidatr
    kiedihndivkevtkikvepeefnflws