PDB entry 2yjy

View 2yjy on RCSB PDB site
Description: A specific and modular binding code for cytosine recognition in PUF domains
Class: RNA binding protein/RNA
Keywords: RNA binding protein-RNA complex, nanos response element
Deposited on 2011-05-24, released 2011-06-08
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-10-28, with a file datestamp of 2015-10-23.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pumilio homolog 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q14671 (1-End)
      • engineered mutation (216)
      • engineered mutation (220)
    Domains in SCOPe 2.06: d2yjya_
  • Chain 'B':
    Compound: Pumilio homolog 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q14671 (1-End)
      • engineered mutation (216)
      • engineered mutation (220)
    Domains in SCOPe 2.06: d2yjyb_
  • Chain 'C':
    Compound: 5'-r(*ap*up*up*gp*cp*ap*up*ap*up*ap)-3'
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: 5'-r(*ap*up*up*gp*cp*ap*up*ap*up*ap)-3'
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2yjyA (A:)
mgrsrlledfrnnrypnlqlreiaghimefsqdqhgsrfiqlkleratpaerqlvfneil
qaayqlmvdvfgnyviqkffefgsleqklalaerirghvlslalqmygcrviqkalefip
sdqqnemvreldghvlkcvkdqngnhvvqkciecvqpqslqfiidafkgqvfalsthpyg
crviqrilehclpdqtlpileelhqhteqlvqdqygsyvirhvlehgrpedkskivaeir
gnvlvlsqhkfasnvvekcvthasrteravlidevctmndgphsalytmmkdqyanyvvq
kmidvaepgqrkivmhkirphiatlrkytygkhilaklekyymkngvdlg

    Sequence, based on observed residues (ATOM records): (download) 
    >2yjyA (A:)
grsrlledfrnnrypnlqlreiaghimefsqdqhgsrfiqlkleratpaerqlvfneilq
aayqlmvdvfgnyviqkffefgsleqklalaerirghvlslalqmygcrviqkalefips
dqqnemvreldghvlkcvkdqngnhvvqkciecvqpqslqfiidafkgqvfalsthpygc
rviqrilehclpdqtlpileelhqhteqlvqdqygsyvirhvlehgrpedkskivaeirg
nvlvlsqhkfasnvvekcvthasrteravlidevctmndgphsalytmmkdqyanyvvqk
midvaepgqrkivmhkirphiatlrkytygkhilakl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2yjyB (B:)
mgrsrlledfrnnrypnlqlreiaghimefsqdqhgsrfiqlkleratpaerqlvfneil
qaayqlmvdvfgnyviqkffefgsleqklalaerirghvlslalqmygcrviqkalefip
sdqqnemvreldghvlkcvkdqngnhvvqkciecvqpqslqfiidafkgqvfalsthpyg
crviqrilehclpdqtlpileelhqhteqlvqdqygsyvirhvlehgrpedkskivaeir
gnvlvlsqhkfasnvvekcvthasrteravlidevctmndgphsalytmmkdqyanyvvq
kmidvaepgqrkivmhkirphiatlrkytygkhilaklekyymkngvdlg

    Sequence, based on observed residues (ATOM records): (download) 
    >2yjyB (B:)
grsrlledfrnnrypnlqlreiaghimefsqdqhgsrfiqlkleratpaerqlvfneilq
aayqlmvdvfgnyviqkffefgsleqklalaerirghvlslalqmygcrviqkalefips
dqqnemvreldghvlkcvkdqngnhvvqkciecvqpqslqfiidafkgqvfalsthpygc
rviqrilehclpdqtlpileelhqhteqlvqdqygsyvirhvlehgrpedkskivaeirg
nvlvlsqhkfasnvvekcvthasrteravlidevctmndgphsalytmmkdqyanyvvqk
midvaepgqrkivmhkirphiatlrkytygkhilaklekyy

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.