PDB entry 2yi8

View 2yi8 on RCSB PDB site
Description: Structure of the RNA polymerase VP1 from Infectious Pancreatic Necrosis Virus
Class: transferase
Keywords: transferase, reverse transcriptase, ipnv
Deposited on 2011-05-11, released 2011-07-20
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-12-28, with a file datestamp of 2011-12-23.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.1663
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-directed RNA polymerase
    Species: INFECTIOUS PANCREATIC NECROSIS VIRUS [TaxId:11002]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22173 (Start-789)
      • expression tag (790-791)
    Domains in SCOPe 2.07: d2yi8a1, d2yi8a2
  • Chain 'B':
    Compound: RNA-directed RNA polymerase
    Species: INFECTIOUS PANCREATIC NECROSIS VIRUS [TaxId:11002]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22173 (Start-789)
      • expression tag (790-791)
    Domains in SCOPe 2.07: d2yi8b1, d2yi8b2
  • Chain 'C':
    Compound: RNA-directed RNA polymerase
    Species: INFECTIOUS PANCREATIC NECROSIS VIRUS [TaxId:11002]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22173 (Start-789)
      • expression tag (790-791)
    Domains in SCOPe 2.07: d2yi8c1, d2yi8c2
  • Chain 'D':
    Compound: RNA-directed RNA polymerase
    Species: INFECTIOUS PANCREATIC NECROSIS VIRUS [TaxId:11002]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22173 (Start-789)
      • expression tag (790-791)
    Domains in SCOPe 2.07: d2yi8d1, d2yi8d2
  • Chain 'E':
    Compound: RNA-directed RNA polymerase
    Species: INFECTIOUS PANCREATIC NECROSIS VIRUS [TaxId:11002]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22173 (Start-789)
      • expression tag (790-791)
    Domains in SCOPe 2.07: d2yi8e1, d2yi8e2
  • Heterogens: K, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2yi8A (A:)
msdifnspqnkasiltalmksttgdvedvlipkrfrpakdpldspqaaaqflkdnkyril
rpraiptmveletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtf
gapditllkqltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatg
rnpnktpktvgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylph
vtikssaglpyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscg
llfpkgerytqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfsp
fhggmdrimtiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammy
ylltrgwtnedgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnn
hlmstivvaewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgy
ladgsdlppirpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalar
kpgaeiayqivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnms
efggdlegitlsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykd
pksavwrlldqrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllks
sltetrealektghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2yi8A (A:)
kasiltalmipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmveletdaalprlr
qmvedgklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllkqltffllendfp
tgpetlrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpktvgytneqlakll
eqtlpintpkhedpdlrwapswlinytgdlstdksylphvtikssaglpyigktkgdtta
ealvladsfirdlgraatsadpeagvkktitdfwylscgllfpkgerytqvdwdkktrni
wsapypthlllsmvstpvmnesklnitntqtpslygfspfhggmdrimtiirdsldnded
lvmiyadniyilqdntwysidlekgeanctpqhmqammyylltrgwtnedgsprynptwa
tfamnvapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivvaewvkagkpnpmt
kefmdleektginfkierelknlretiveavetapqdgyladgsdlppirpgkaveldll
gwsaiysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayqivryeairlvgg
wnnplletaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegitlsepltnqtlv
dintpldsfdpkarpqtprspkktldevttaitsgtykdpksavwrlldqrtklrvstlr
dqalalkpasssvdnwaeateelaqqqqllmkannllkssltetrealekt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2yi8B (B:)
msdifnspqnkasiltalmksttgdvedvlipkrfrpakdpldspqaaaqflkdnkyril
rpraiptmveletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtf
gapditllkqltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatg
rnpnktpktvgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylph
vtikssaglpyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscg
llfpkgerytqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfsp
fhggmdrimtiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammy
ylltrgwtnedgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnn
hlmstivvaewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgy
ladgsdlppirpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalar
kpgaeiayqivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnms
efggdlegitlsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykd
pksavwrlldqrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllks
sltetrealektghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2yi8B (B:)
kasiltalmipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmveletdaalprlr
qmvedgklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllkqltffllendfp
tgpetlrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpktvgytneqlakll
eqtlpintpkhedpdlrwapswlinytgdlstdksylphvtikssaglpyigktkgdtta
ealvladsfirdlgraatsadpeagvkktitdfwylscgllfpkgerytqvdwdkktrni
wsapypthlllsmvstpvmnesklnitntqtpslygfspfhggmdrimtiirdsldnded
lvmiyadniyilqdntwysidlekgeanctpqhmqammyylltrgwtnedgsprynptwa
tfamnvapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivvaewvkagkpnpmt
kefmdleektginfkierelknlretiveavetapqdgyladgsdlppirpgkaveldll
gwsaiysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayqivryeairlvgg
wnnplletaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegitlsepltnqtlv
dintpldsfdpkarpqtprspkktldevttaitsgtykdpksavwrlldqrtklrvstlr
dqalalkpasssvdnwaeateelaqqqqllmkannllkssltetrealekt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2yi8C (C:)
msdifnspqnkasiltalmksttgdvedvlipkrfrpakdpldspqaaaqflkdnkyril
rpraiptmveletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtf
gapditllkqltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatg
rnpnktpktvgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylph
vtikssaglpyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscg
llfpkgerytqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfsp
fhggmdrimtiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammy
ylltrgwtnedgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnn
hlmstivvaewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgy
ladgsdlppirpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalar
kpgaeiayqivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnms
efggdlegitlsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykd
pksavwrlldqrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllks
sltetrealektghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2yi8C (C:)
kasiltalmipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmveletdaalprlr
qmvedgklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllkqltffllendfp
tgpetlrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpktvgytneqlakll
eqtlpintpkhedpdlrwapswlinytgdlstdksylphvtikssaglpyigktkgdtta
ealvladsfirdlgraatsadpeagvkktitdfwylscgllfpkgerytqvdwdkktrni
wsapypthlllsmvstpvmnesklnitntqtpslygfspfhggmdrimtiirdsldnded
lvmiyadniyilqdntwysidlekgeanctpqhmqammyylltrgwtnedgsprynptwa
tfamnvapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivvaewvkagkpnpmt
kefmdleektginfkierelknlretiveavetapqdgyladgsdlppirpgkaveldll
gwsaiysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayqivryeairlvgg
wnnplletaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegitlsepltnqtlv
dintpldsfdpkarpqtprspkktldevttaitsgtykdpksavwrlldqrtklrvstlr
dqalalkpasssvdnwaeateelaqqqqllmkannllkssltetrealekt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2yi8D (D:)
msdifnspqnkasiltalmksttgdvedvlipkrfrpakdpldspqaaaqflkdnkyril
rpraiptmveletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtf
gapditllkqltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatg
rnpnktpktvgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylph
vtikssaglpyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscg
llfpkgerytqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfsp
fhggmdrimtiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammy
ylltrgwtnedgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnn
hlmstivvaewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgy
ladgsdlppirpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalar
kpgaeiayqivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnms
efggdlegitlsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykd
pksavwrlldqrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllks
sltetrealektghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2yi8D (D:)
kasiltalmipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmveletdaalprlr
qmvedgklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllkqltffllendfp
tgpetlrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpktvgytneqlakll
eqtlpintpkhedpdlrwapswlinytgdlstdksylphvtikssaglpyigktkgdtta
ealvladsfirdlgraatsadpeagvkktitdfwylscgllfpkgerytqvdwdkktrni
wsapypthlllsmvstpvmnesklnitntqtpslygfspfhggmdrimtiirdsldnded
lvmiyadniyilqdntwysidlekgeanctpqhmqammyylltrgwtnedgsprynptwa
tfamnvapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivvaewvkagkpnpmt
kefmdleektginfkierelknlretiveavetapqdgyladgsdlppirpgkaveldll
gwsaiysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayqivryeairlvgg
wnnplletaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegitlsepltnqtlv
dintpldsfdpkarpqtprspkktldevttaitsgtykdpksavwrlldqrtklrvstlr
dqalalkpasssvdnwaeateelaqqqqllmkannllkssltetrealekt

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2yi8E (E:)
msdifnspqnkasiltalmksttgdvedvlipkrfrpakdpldspqaaaqflkdnkyril
rpraiptmveletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtf
gapditllkqltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatg
rnpnktpktvgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylph
vtikssaglpyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscg
llfpkgerytqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfsp
fhggmdrimtiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammy
ylltrgwtnedgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnn
hlmstivvaewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgy
ladgsdlppirpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalar
kpgaeiayqivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnms
efggdlegitlsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykd
pksavwrlldqrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllks
sltetrealektghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2yi8E (E:)
kasiltalmipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmveletdaalprlr
qmvedgklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllkqltffllendfp
tgpetlrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpktvgytneqlakll
eqtlpintpkhedpdlrwapswlinytgdlstdksylphvtikssaglpyigktkgdtta
ealvladsfirdlgraatsadpeagvkktitdfwylscgllfpkgerytqvdwdkktrni
wsapypthlllsmvstpvmnesklnitntqtpslygfspfhggmdrimtiirdsldnded
lvmiyadniyilqdntwysidlekgeanctpqhmqammyylltrgwtnedgsprynptwa
tfamnvapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivvaewvkagkpnpmt
kefmdleektginfkierelknlretiveavetapqdgyladgsdlppirpgkaveldll
gwsaiysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayqivryeairlvgg
wnnplletaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegitlsepltnqtlv
dintpldsfdpkarpqtprspkktldevttaitsgtykdpksavwrlldqrtklrvstlr
dqalalkpasssvdnwaeateelaqqqqllmkannllkssltetrealekt