SCOPe 2.08: Structural Classification of Proteins

PDB entry 2yfi

View 2yfi on RCSB PDB site
Description: crystal structure of biphenyl dioxygenase variant rr41 (bpdo-rr41)
Class: oxidoreductase
Keywords: oxidoreductase, degradation
Deposited on 2011-04-06, released 2011-06-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-08-10, with a file datestamp of 2011-08-05.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.20152
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
  - engineered mutation (408)
Domains in SCOPe 2.08: d2yfia1, d2yfia2
Chain 'B':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2yfib_
Chain 'C':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
  - engineered mutation (408)
Domains in SCOPe 2.08: d2yfic1, d2yfic2
Chain 'D':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2yfid_
Chain 'E':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
  - engineered mutation (408)
Domains in SCOPe 2.08: d2yfie1, d2yfie2
Chain 'F':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2yfif_
Chain 'G':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
  - engineered mutation (408)
Domains in SCOPe 2.08: d2yfig1, d2yfig2
Chain 'H':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2yfih_
Chain 'I':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
  - engineered mutation (408)
Domains in SCOPe 2.08: d2yfii1, d2yfii2
Chain 'J':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2yfij_
Chain 'K':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
  - engineered mutation (408)
Domains in SCOPe 2.08: d2yfik1, d2yfik2
Chain 'L':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2yfil_
Heterogens: FES, FE2, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>2yfiA (A:)
mssaikevqgapvkwvtnwtpeairglvdqekglldpriyadqslyelelervfgrswll
lgheshvpetgdflatymgedpvvmvrqkdksikvflnqcrhrgmricrsdagnakaftc
syhgwaydiagklvnvpfekeafcdkkegdcgfdkaewgplqarvatykglvfanwdvqa
pdletylgdarpymdvmldrtpagtvaiggmqkwvipcnwkfaaeqfcsdmyhagttthl
sgilagippemdlsqaqiptkgnqfraawgghgsgwyvdepgsllavmgpkvtqywtegp
aaelaeqrlghtgmpvrrmvgqhmtifptcsflpamnqirvwhprgpneievwaftlvda
dapaeikeeyrrhnirnfsaggvfeqddgenwveiqkglrgykaksqpfnaqmglgrsqt
ghpdfpgnvgyvyaeeaargmyhhwmrmmsepswatlkp