PDB entry 2yfh

View 2yfh on RCSB PDB site
Description: Structure of a Chimeric Glutamate Dehydrogenase
Class: oxidoreductase
Keywords: oxidoreductase, chimera
Deposited on 2011-04-05, released 2012-04-04
The last revision prior to the SCOPe 2.03 freeze date was dated 2012-04-04, with a file datestamp of 2012-03-30.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.2184
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glutamate dehydrogenase, nad-specific glutamate dehydrogenase, glutamate dehydrogenase
    Species: CLOSTRIDIUM SYMBIOSUM, ESCHERICHIA COLI, CLOSTRIDIUM SYMBIOSUM [TaxId:1512, 562, 1512]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2yfha1, d2yfha2
  • Chain 'B':
    Compound: glutamate dehydrogenase, nad-specific glutamate dehydrogenase, glutamate dehydrogenase
    Species: CLOSTRIDIUM SYMBIOSUM, ESCHERICHIA COLI, CLOSTRIDIUM SYMBIOSUM [TaxId:1512, 562, 1512]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2yfhb1, d2yfhb2
  • Chain 'C':
    Compound: glutamate dehydrogenase, nad-specific glutamate dehydrogenase, glutamate dehydrogenase
    Species: CLOSTRIDIUM SYMBIOSUM, ESCHERICHIA COLI, CLOSTRIDIUM SYMBIOSUM [TaxId:1512, 562, 1512]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2yfhc1, d2yfhc2
  • Chain 'D':
    Compound: glutamate dehydrogenase, nad-specific glutamate dehydrogenase, glutamate dehydrogenase
    Species: CLOSTRIDIUM SYMBIOSUM, ESCHERICHIA COLI, CLOSTRIDIUM SYMBIOSUM [TaxId:1512, 562, 1512]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2yfhd1, d2yfhd2
  • Chain 'E':
    Compound: glutamate dehydrogenase, nad-specific glutamate dehydrogenase, glutamate dehydrogenase
    Species: CLOSTRIDIUM SYMBIOSUM, ESCHERICHIA COLI, CLOSTRIDIUM SYMBIOSUM [TaxId:1512, 562, 1512]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2yfhe1, d2yfhe2
  • Chain 'F':
    Compound: glutamate dehydrogenase, nad-specific glutamate dehydrogenase, glutamate dehydrogenase
    Species: CLOSTRIDIUM SYMBIOSUM, ESCHERICHIA COLI, CLOSTRIDIUM SYMBIOSUM [TaxId:1512, 562, 1512]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2yfhf1, d2yfhf2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2yfhA (A:)
mskyvdrviaevekkyadepefvqtveevlsslgpvvdahpeyeevallermvipervie
frvpweddngkvhvntgyrvqfngaigpykgglrfapsvnlsimkflgfeqafkdslttl
pmggakggsdfdpngksdrevmrfcqafmtelyrhigpdidvpagdlgvgareigymygq
yrkivggfyngvltgkarsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsg
nvaqyaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakefg
lvylegqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqq
agvlfapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimtdihdgsaaaaeryg
lgynlvaganivgfqkiadammaqgiaw

    Sequence, based on observed residues (ATOM records): (download) 
    >2yfhA (A:)
mskyvdrviaevekkyadepefvqtveevlsslgpvvdahpeyeevallermvipervie
frvpweddngkvhvntgyrvqfngaigpykgglrfapsvnlsimkflgfeqafkdslttl
pmggakggsdfdpngksdrevmrfcqafmtelyrhigpdidvpagdlgvgareigymygq
yrkivggfyngvltgkarsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsg
nvaqyaiekamefgarvitasdssgtvvdesgftkeklarlieidgrvadyakefglvyl
egqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqqagvl
fapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimtdihdgsaaaaeryglgyn
lvaganivgfqkiadammaqgiaw

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2yfhB (B:)
mskyvdrviaevekkyadepefvqtveevlsslgpvvdahpeyeevallermvipervie
frvpweddngkvhvntgyrvqfngaigpykgglrfapsvnlsimkflgfeqafkdslttl
pmggakggsdfdpngksdrevmrfcqafmtelyrhigpdidvpagdlgvgareigymygq
yrkivggfyngvltgkarsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsg
nvaqyaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakefg
lvylegqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqq
agvlfapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimtdihdgsaaaaeryg
lgynlvaganivgfqkiadammaqgiaw

    Sequence, based on observed residues (ATOM records): (download) 
    >2yfhB (B:)
skyvdrviaevekkyadepefvqtveevlsslgpvvdahpeyeevallermvipervief
rvpweddngkvhvntgyrvqfngaigpykgglrfapsvnlsimkflgfeqafkdslttlp
mggakggsdfdpngksdrevmrfcqafmtelyrhigpdidvpagdlgvgareigymygqy
rkivggfyngvltgkarsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsgn
vaqyaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakefgl
vylegqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqqa
gvlfapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimtdihdgsaaaaerygl
gynlvaganivgfqkiadammaqgiaw

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2yfhC (C:)
mskyvdrviaevekkyadepefvqtveevlsslgpvvdahpeyeevallermvipervie
frvpweddngkvhvntgyrvqfngaigpykgglrfapsvnlsimkflgfeqafkdslttl
pmggakggsdfdpngksdrevmrfcqafmtelyrhigpdidvpagdlgvgareigymygq
yrkivggfyngvltgkarsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsg
nvaqyaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakefg
lvylegqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqq
agvlfapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimtdihdgsaaaaeryg
lgynlvaganivgfqkiadammaqgiaw

    Sequence, based on observed residues (ATOM records): (download) 
    >2yfhC (C:)
skyvdrviaevekkyadepefvqtveevlsslgpvvdahpeyeevallermvipervief
rvpweddngkvhvntgyrvqfngaigpykgglrfapsvnlsimkflgfeqafkdslttlp
mggakggsdfdpngksdrevmrfcqafmtelyrhigpdidvpagdlgvgareigymygqy
rkivggfyngvltgkarsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsgn
vaqyaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakefgl
vylegqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqqa
gvlfapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimtdihdgsaaaaerygl
gynlvaganivgfqkiadammaqgiaw

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2yfhD (D:)
mskyvdrviaevekkyadepefvqtveevlsslgpvvdahpeyeevallermvipervie
frvpweddngkvhvntgyrvqfngaigpykgglrfapsvnlsimkflgfeqafkdslttl
pmggakggsdfdpngksdrevmrfcqafmtelyrhigpdidvpagdlgvgareigymygq
yrkivggfyngvltgkarsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsg
nvaqyaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakefg
lvylegqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqq
agvlfapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimtdihdgsaaaaeryg
lgynlvaganivgfqkiadammaqgiaw

    Sequence, based on observed residues (ATOM records): (download) 
    >2yfhD (D:)
skyvdrviaevekkyadepefvqtveevlsslgpvvdahpeyeevallermvipervief
rvpweddngkvhvntgyrvqfngaigpykgglrfapsvnlsimkflgfeqafkdslttlp
mggakggsdfdpngksdrevmrfcqafmtelyrhigpdidvpagdlgvgareigymygqy
rkivggfyngvltgkarsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsgn
vaqyaiekamefgarvitasdssgtvvdesgftkeklarlieikagrvadyakefglvyl
egqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqqagvl
fapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimtdihdgsaaaaeryglgyn
lvaganivgfqkiadammaqgiaw

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2yfhE (E:)
mskyvdrviaevekkyadepefvqtveevlsslgpvvdahpeyeevallermvipervie
frvpweddngkvhvntgyrvqfngaigpykgglrfapsvnlsimkflgfeqafkdslttl
pmggakggsdfdpngksdrevmrfcqafmtelyrhigpdidvpagdlgvgareigymygq
yrkivggfyngvltgkarsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsg
nvaqyaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakefg
lvylegqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqq
agvlfapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimtdihdgsaaaaeryg
lgynlvaganivgfqkiadammaqgiaw

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2yfhF (F:)
mskyvdrviaevekkyadepefvqtveevlsslgpvvdahpeyeevallermvipervie
frvpweddngkvhvntgyrvqfngaigpykgglrfapsvnlsimkflgfeqafkdslttl
pmggakggsdfdpngksdrevmrfcqafmtelyrhigpdidvpagdlgvgareigymygq
yrkivggfyngvltgkarsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsg
nvaqyaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakefg
lvylegqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqq
agvlfapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimtdihdgsaaaaeryg
lgynlvaganivgfqkiadammaqgiaw

    Sequence, based on observed residues (ATOM records): (download) 
    >2yfhF (F:)
skyvdrviaevekkyadepefvqtveevlsslgpvvdahpeyeevallermvipervief
rvpweddngkvhvntgyrvqfngaigpykgglrfapsvnlsimkflgfeqafkdslttlp
mggakggsdfdpngksdrevmrfcqafmtelyrhigpdidvpagdlgvgareigymygqy
rkivggfyngvltgkarsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsgn
vaqyaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakefgl
vylegqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqqa
gvlfapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimtdihdgsaaaaerygl
gynlvaganivgfqkiadammaqgiaw