PDB entry 2yf5

View 2yf5 on RCSB PDB site
Description: complex of a b21 chicken MHC class I molecule and a 10mer chicken peptide
Class: immune system
Keywords: immune system, immune response, immunoglobulin domain, MHC I
Deposited on 2011-04-04, released 2012-04-18
Made obsolete by 4d0c on 2015-05-06

The last revision prior to the SCOPe 2.03 freeze date was dated 2012-04-18, with a file datestamp of 2012-04-13.
Experiment type: XRAY
Resolution: 2.82 Å
R-factor: 0.2616
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major histocompatibility complex class I glycoprotein haplotype B21
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q95601 (Start-290)
      • expression tag (291-297)
    Domains in SCOPe 2.03: d2yf5a1, d2yf5a2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2yf5b_
  • Chain 'C':
    Compound: peptide
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
    • PDB 2YF5 (0-9)
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2yf5A (A:)
    mgscgalglglllaavcgaaaelhtlryirtamtdpgpglpwfvdvgyvdgelfmhynst
    arravprtewiaantdqqywdretqivqgseqinrenldilrrrynqtggshtvqwmsgc
    diledgtirgyhqaaydgrdfvafdkgtmtltaavpeavptkrkweeggyaeglkqylee
    tcvewlrryveygkaelgrrerpevrvwgkeadgiltlscrahgfyprpivvswlkdgav
    rgqdaqsggivpngdgtyhtwvtidaqpgdgdkyqcrvehaslpqpglyswrsggglndi
    feaqkiewhensssvdklaaalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2yf5A (A:)
    elhtlryirtamtdpgpglpwfvdvgyvdgelfmhynstarravprtewiaantdqqywd
    retqivqgseqinrenldilrrrynqtggshtvqwmsgcdiledgtirgyhqaaydgrdf
    vafdkgtmtltaavpeavptkrkweeggyaeglkqyleetcvewlrryveygkaelgrre
    rpevrvwgkeadgiltlscrahgfyprpivvswlkdgavrgqdaqsggivpngdgtyhtw
    vtidaqpgdgdkyqcrvehaslpqpglyswrsgggln
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2yf5B (B:)
    dltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwt
    fqrlvhadftpssgstyackvehetlkepqvykwdpef
    

    Sequence, based on observed residues (ATOM records): (download)
    >2yf5B (B:)
    ltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwtf
    qrlvhadftpssgstyackvehetlkepqvykwdpef
    

  • Chain 'C':
    No sequence available.