PDB entry 2yf1
View 2yf1 on RCSB PDB site
Description: complex of a b21 chicken MHC class I molecule and a 11mer chicken peptide
Class: immune system
Keywords: immune system, bf21, immune response, immunoglobulin domain
Deposited on
2011-03-31, released
2012-04-11
Made obsolete by
5ad0 on
2016-09-28
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-04-11, with a file datestamp of 2012-04-06.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: 0.2116
AEROSPACI score: 0.25 (click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Major histocompatibility complex class I glycoprotein haplotype B21
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2yf1a1, d2yf1a2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2yf1b_ - Chain 'C':
Compound: peptide
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
- Heterogens: CA, EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2yf1A (A:)
mgscgalglglllaavcgaaaelhtlryirtamtdpgpglpwfvdvgyvdgelfmhynst
arravprtewiaantdqqywdretqivqgseqinrenldilrrrynqtggshtvqwmsgc
diledgtirgyhqaaydgrdfvafdkgtmtltaavpeavptkrkweeggyaeglkqylee
tcvewlrryveygkaelgrrerpevrvwgkeadgiltlscrahgfyprpivvswlkdgav
rgqdaqsggivpngdgtyhtwvtidaqpgdgdkyqcrvehaslpqpglyswrsggglndi
feaqkiewhensssvdklaaalehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>2yf1A (A:)
elhtlryirtamtdpgpglpwfvdvgyvdgelfmhynstarravprtewiaantdqqywd
retqivqgseqinrenldilrrrynqtggshtvqwmsgcdiledgtirgyhqaaydgrdf
vafdkgtmtltaavpeavptkrkweeggyaeglkqyleetcvewlrryveygkaelgrre
rpevrvwgkeadgiltlscrahgfyprpivvswlkdgavrgqdaqsggivpngdgtyhtw
vtidaqpgdgdkyqcrvehaslpqpglysw
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>2yf1B (B:)
dltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwt
fqrlvhadftpssgstyackvehetlkepqvykwdpef
- Chain 'C':
No sequence available.