PDB entry 2xsd

View 2xsd on RCSB PDB site
Description: crystal structure of the dimeric oct-6 (pou3f1) pou domain bound to palindromic more DNA
Class: transcription/DNA
Keywords: transcription-DNA complex, sox
Deposited on 2010-09-28, released 2010-10-20
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-05-11, with a file datestamp of 2011-05-06.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.1978
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5'-d(*ap*tp*gp*cp*ap*tp*gp*ap*gp*gp*ap)-3'
  • Chain 'B':
    Compound: 5'-d(*cp*cp*tp*cp*ap*tp*gp*cp*ap*tp*ap)-3'
  • Chain 'C':
    Compound: pou domain, class 3, transcription factor 1
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2xsdc1, d2xsdc2
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2xsdC (C:)
ggehsdedapssddleqfakqfkqrriklgftqadvglalgtlygnvfsqtticrfealq
lsfknmcklkpllnkwleetdsssgsptnldkiaaqgrkrkkrtsievgvkgaleshflk
cpkpsaheitgladslqlekevvrvwfcnrrqkekrmtpaagag

    Sequence, based on observed residues (ATOM records): (download) 
    >2xsdC (C:)
apssddleqfakqfkqrriklgftqadvglalgtlygnvfsqtticrfealqlsfknmck
lkpllnkwleetdsievgvkgaleshflkcpkpsaheitgladslqlekevvrvwfcnrr
qkekrmtp