SCOPe 2.08: Structural Classification of Proteins

PDB entry 2xr8

View 2xr8 on RCSB PDB site
Description: crystal structure of biphenyl dioxygenase from burkholderia xenovorans lb400
Class: oxidoreductase
Keywords: oxidoreductase, degradation, bpdo
Deposited on 2010-09-12, released 2010-11-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-02-16, with a file datestamp of 2011-02-11.
Experiment type: XRAY
Resolution: 2.49 Å
R-factor: 0.21649
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xr8a1, d2xr8a2
Chain 'B':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xr8b_
Chain 'C':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xr8c1, d2xr8c2
Chain 'D':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xr8d_
Chain 'E':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xr8e1, d2xr8e2
Chain 'F':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xr8f_
Chain 'G':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xr8g1, d2xr8g2
Chain 'H':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xr8h_
Chain 'I':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xr8i1, d2xr8i2
Chain 'J':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xr8j_
Chain 'K':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xr8k1, d2xr8k2
Chain 'L':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xr8l_
Chain 'M':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xr8m1, d2xr8m2
Chain 'N':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xr8n_
Chain 'O':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xr8o1, d2xr8o2
Chain 'P':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xr8p_
Chain 'Q':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xr8q1, d2xr8q2
Chain 'R':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xr8r_
Chain 'S':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xr8s1, d2xr8s2
Chain 'T':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xr8t_
Chain 'U':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xr8u1, d2xr8u2
Chain 'V':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xr8v_
Chain 'W':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xr8w1, d2xr8w2
Chain 'X':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xr8x_
Heterogens: FES, FE2, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>2xr8A (A:)
mssaikevqgapvkwvtnwtpeairglvdqekglldpriyadqslyelelervfgrswll
lgheshvpetgdflatymgedpvvmvrqkdksikvflnqcrhrgmricrsdagnakaftc
syhgwaydiagklvnvpfekeafcdkkegdcgfdkaewgplqarvatykglvfanwdvqa
pdletylgdarpymdvmldrtpagtvaiggmqkwvipcnwkfaaeqfcsdmyhagttthl
sgilagippemdlsqaqiptkgnqfraawgghgsgwyvdepgsllavmgpkvtqywtegp
aaelaeqrlghtgmpvrrmvgqhmtifptcsflptfnniriwhprgpneievwaftlvda
dapaeikeeyrrhnirnfsaggvfeqddgenwveiqkglrgykaksqplnaqmglgrsqt
ghpdfpgnvgyvyaeeaargmyhhwmrmmsepswatlkp