PDB entry 2x5v

View 2x5v on RCSB PDB site
Description: 80 microsecond laue diffraction snapshot from crystals of a photosynthetic reaction centre 3 millisecond following photoactivation.
Class: photosynthesis
Keywords: lipidic-sponge phase, photosynthesis, electron transport, cell membrane, metal-binding, transmembrane, formylation, lipoprotein, lipids, transport
Deposited on 2010-02-10, released 2010-05-12
The last revision prior to the SCOPe 2.05 freeze date was dated 2012-02-01, with a file datestamp of 2012-01-27.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.27866
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'C':
    Compound: Photosynthetic reaction center cytochrome c subunit
    Species: Blastochloris viridis [TaxId:1079]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2x5vc_
  • Chain 'H':
    Compound: reaction center protein h chain
    Species: Blastochloris viridis [TaxId:1079]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2x5vh1, d2x5vh2
  • Chain 'L':
    Compound: reaction center protein l chain
    Species: Blastochloris viridis [TaxId:1079]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2x5vl_
  • Chain 'M':
    Compound: reaction center protein m chain
    Species: Blastochloris viridis [TaxId:1079]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2x5vm_
  • Heterogens: HEM, BCB, BPB, FE2, MQ7, HOH

PDB Chain Sequences:

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2x5vC (C:)
cfepppatttqtgfrglsmgevlhpatvkakkerdaqyppalaavkaegppvsqvyknvk
vlgnlteaeflrtmtaitewvspqegctychdennlaseakypyvvarrmlemtraintn
wtqhvaqtgvtcytchrgtplppyvryleptlplnnretpthvervetrsgyvvrlakyt
aysalnydpftmflandkrqvrvvpqtalplvgvsrgkerrplsdayatfalmmsisdsl
gtnctfchnaqtfeswgkkstpqraiawwgirmvrdlnmnylaplnaslpasrlgrqgea
pqadcrtchqgvtkplfgasrlkdypelgpikaaak

    Sequence, based on observed residues (ATOM records): (download) 
    >2x5vC (C:)
cfepppatttqtgfrglsmgevlhpatvkakkerdaqyppalaavkaegppvsqvyknvk
vlgnlteaeflrtmtaitewvspqegctychdennlaseakypyvvarrmlemtraintn
wtqhvaqtgvtcytchrgtplppyvryleptlplnnretpthvervetrsgyvvrlakyt
aysalnydpftmflandkrqvrvvpqtalplvgvsrgkerrplsdayatfalmmsisdsl
gtnctfchnaqtfeswgkkstpqraiawwgirmvrdlnmnylaplnaslpasrlgrqgea
pqadcrtchqgvtkplfgasrlkdypelgpik

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2x5vH (H:)
myhgalaqhldiaqlvwyaqwlviwtvvllylrredrregyplveplglvklapedgqvy
elpypktfvlphggtvtvprrrpetrelklaqtdgfegaplqptgnplvdavgpasyaer
aevvdatvdgkakivplrvatdfsiaegdvdprglpvvaadgveagtvtdlwvdrsehyf
rylelsvagsartaliplgfcdvkkdkivvtsilseqfanvprlqsrdqitlreedkvsa
yyaggllyatperaesll

    Sequence, based on observed residues (ATOM records): (download) 
    >2x5vH (H:)
myhgalaqhldiaqlvwyaqwlviwtvvllylrredrregyplveelpypktfvlphggt
vtvprrrpetrelklaqtdgfegaplqptgnplvdavgpasyaeraevvdatvdgkakiv
plrvatdfsiaegdvdprglpvvaadgveagtvtdlwvdrsehyfrylelsvagsartal
iplgfcdvkkdkivvtsilseqfanvprlqsrdqitlreedkvsayyaggllyatperae
sll

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >2x5vL (L:)
mallsferkyrvrggtliggdlfdfwvgpyfvgffgvsaiffiflgvsligyaasqgptw
dpfaisinppdlkyglgaaplleggfwqaitvcalgafiswmlreveisrklgigwhvpl
afcvpifmfcvlqvfrplllgswghafpygilshldwvnnfgyqylnwhynpghmssvsf
lfvnamalglhgglilsvanpgdgdkvktaehenqyfrdvvgysigalsihrlglflasn
ifltgafgtiasgpfwtrgwpewwgwwldipfws

    Sequence, based on observed residues (ATOM records): (download) 
    >2x5vL (L:)
allsferkyrvrggtliggdlfdfwvgpyfvgffgvsaiffiflgvsligyaasqgptwd
pfaisinppdlkyglgaaplleggfwqaitvcalgafiswmlreveisrklgigwhvpla
fcvpifmfcvlqvfrplllgswghafpygilshldwvnnfgyqylnwhynpghmssvsfl
fvnamalglhgglilsvanpgdgdkvktaehenqyfrdvvgysigalsihrlglflasni
fltgafgtiasgpfwtrgwpewwgwwldipfws

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >2x5vM (M:)
madyqtiytqiqargphitvsgewgdndrvgkpfysywlgkigdaqigpiylgasgiaaf
afgstailiilfnmaaevhfdplqffrqffwlglyppkaqygmgipplhdggwwlmaglf
mtlslgswwirvysraralglgthiawnfaaaiffvlcigcihptlvgswsegvpfgiwp
hidwltafsirygnfyycpwhgfsigfaygcgllfaahgatilavarfggdreieqitdr
gtaveraalfwrwtigfnatiesvhrwgwffslmvmvsasvgilltgtfvdnwylwcvkh
gaapdypaylpatpdpaslpgapk

    Sequence, based on observed residues (ATOM records): (download) 
    >2x5vM (M:)
adyqtiytqiqargphitvsgewgdndrvgkpfysywlgkigdaqigpiylgasgiaafa
fgstailiilfnmaaevhfdplqffrqffwlglyppkaqygmgipplhdggwwlmaglfm
tlslgswwirvysraralglgthiawnfaaaiffvlcigcihptlvgswsegvpfgiwph
idwltafsirygnfyycpwhgfsigfaygcgllfaahgatilavarfggdreieqitdrg
taveraalfwrwtigfnatiesvhrwgwffslmvmvsasvgilltgtfvdnwylwcvkhg
aapdypaylpatpdpaslpgapk