PDB entry 2x1l

View 2x1l on RCSB PDB site
Description: crystal structure of mycobacterium smegmatis methionyl-tRNA synthetase in complex with methionine and adenosine
Class: ligase
Keywords: nucleotide-binding, protein biosynthesis, ligase, aminoacyl-tRNA synthetase
Deposited on 2009-12-31, released 2010-07-28
The last revision prior to the SCOPe 2.06 freeze date was dated 2010-09-29, with a file datestamp of 2010-09-24.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.219
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Methionyl-tRNA synthetase
    Species: MYCOBACTERIUM SMEGMATIS [TaxId:246196]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2x1la1, d2x1la2
  • Chain 'B':
    Compound: Methionyl-tRNA synthetase
    Species: MYCOBACTERIUM SMEGMATIS [TaxId:246196]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2x1lb1
  • Chain 'C':
    Compound: Methionyl-tRNA synthetase
    Species: MYCOBACTERIUM SMEGMATIS [TaxId:246196]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2x1lc1
  • Heterogens: MET, ADN, CXS, 2HP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2x1lA (A:)
mahhhhhhggsepfyittaiaypngvphighayeyiatdaiarfkrldgydvryltgtdv
hgqkmaetaakegipaaelarrnsdvfqrlqeklnisfdrfirtsdadhyeaskaiwkrm
adagdiyldaykgwysirderfftenetteqpdgtriatetgapvtwteeqtyffrlsay
tdrllalyeehpefigpdarrneivsfvsgglkdlsisrttfdwgvpvpdhpdhvmyvwv
daltnyltgvgfpdtesesfrrywpadlhmigkdiirfhtvywpaflmsaglplpkrifa
hgwllnrgekmsksignvvdpvnlvdtfgldqvryfllrevpfgqdgsynedaiigrvna
dlanelgnlaqrslsmvaknlgaavpdpgeftdedtallaaadallervrehfdvpamhl
aleaiwsvlgaanryfsaqepwvlrksdaaedqqrfrtvlyttlevvriaslllqpvmpe
staklldllgqptderdfsaianrikpgtslpapsgifpryqnd

    Sequence, based on observed residues (ATOM records): (download) 
    >2x1lA (A:)
sepfyittaiaypngvphighayeyiatdaiarfkrldgydvryltgtdvhgqkmaetaa
kegipaaelarrnsdvfqrlqeklnisfdrfirtsdadhyeaskaiwkrmadagdiylda
ykgwysirderfftenetteqpdgtriatetgapvtwteeqtyffrlsaytdrllalyee
hpefigpdarrneivsfvsgglkdlsisrttfdwgvpvpdhpdhvmyvwvdaltnyltgv
gfpdtesesfrrywpadlhmigkdiirfhtvywpaflmsaglplpkrifahgwllnrgek
msksignvvdpvnlvdtfgldqvryfllrevpfgqdgsynedaiigrvnadlanelgnla
qrslsmvaknlgaavpdpgeftdedtallaaadallervrehfdvpamhlaleaiwsvlg
aanryfsaqepwvlrksdaaedqqrfrtvlyttlevvriaslllqpvmpestaklldllg
qptderdfsaianrikpgtslpapsgifpry

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2x1lB (B:)
mahhhhhhggsepfyittaiaypngvphighayeyiatdaiarfkrldgydvryltgtdv
hgqkmaetaakegipaaelarrnsdvfqrlqeklnisfdrfirtsdadhyeaskaiwkrm
adagdiyldaykgwysirderfftenetteqpdgtriatetgapvtwteeqtyffrlsay
tdrllalyeehpefigpdarrneivsfvsgglkdlsisrttfdwgvpvpdhpdhvmyvwv
daltnyltgvgfpdtesesfrrywpadlhmigkdiirfhtvywpaflmsaglplpkrifa
hgwllnrgekmsksignvvdpvnlvdtfgldqvryfllrevpfgqdgsynedaiigrvna
dlanelgnlaqrslsmvaknlgaavpdpgeftdedtallaaadallervrehfdvpamhl
aleaiwsvlgaanryfsaqepwvlrksdaaedqqrfrtvlyttlevvriaslllqpvmpe
staklldllgqptderdfsaianrikpgtslpapsgifpryqnd

    Sequence, based on observed residues (ATOM records): (download) 
    >2x1lB (B:)
sepfyittaiaypngvphighayeyiatdaiarfkrldgydvryltgtdvhgqkmaetaa
kegipaaelarrnsdvfqrlqeklnisfdrfirtsdadhyeaskaiwkrmadagdiylda
ykeqtyffrlsaytdrllalyeehpefigpdarrneivsfvsgglkdlsisrttfdwgvp
vpdhpdhvmyvwvdaltnyltgvgfpdtesesfrrywpadlhmigkdiirfhtvywpafl
msaglplpkrifahgwllnrgekmsksignvvdpvnlvdtfgldqvryfllrevpfgqdg
synedaiigrvnadlanelgnlaqrslsmvaknlgaavpdpgeftdedtallaaadalle
rvrehfdvpamhlaleaiwsvlgaanryfsaqepwvlrksdaaedqqrfrtvlyttlevv
riaslllqpvmpestaklldllgqptderdfsaianrikpgtslpapsgifpry

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2x1lC (C:)
mahhhhhhggsepfyittaiaypngvphighayeyiatdaiarfkrldgydvryltgtdv
hgqkmaetaakegipaaelarrnsdvfqrlqeklnisfdrfirtsdadhyeaskaiwkrm
adagdiyldaykgwysirderfftenetteqpdgtriatetgapvtwteeqtyffrlsay
tdrllalyeehpefigpdarrneivsfvsgglkdlsisrttfdwgvpvpdhpdhvmyvwv
daltnyltgvgfpdtesesfrrywpadlhmigkdiirfhtvywpaflmsaglplpkrifa
hgwllnrgekmsksignvvdpvnlvdtfgldqvryfllrevpfgqdgsynedaiigrvna
dlanelgnlaqrslsmvaknlgaavpdpgeftdedtallaaadallervrehfdvpamhl
aleaiwsvlgaanryfsaqepwvlrksdaaedqqrfrtvlyttlevvriaslllqpvmpe
staklldllgqptderdfsaianrikpgtslpapsgifpryqnd

    Sequence, based on observed residues (ATOM records): (download) 
    >2x1lC (C:)
sepfyittaiaypngvphighayeyiatdaiarfkrldgydvryltgtdvhgqkmaetaa
kegipaaelarrnsdvfqrlqeklnisfdrfirtsdadhyeaskaiwkrmadagdiylda
yteeqtyffrlsaytdrllalyeehpefigpdarrneivsfvsgglkdlsisrttfdwgv
pvpdhpdhvmyvwvdaltnyltgvgfpdtesesfrrywpadlhmigkdiirfhtvywpaf
lmsaglplpkrifahgwllnrgekmsksignvvdpvnlvdtfgldqvryfllrevpfgqd
gsynedaiigrvnadlanelgnlaqrslsmvaknlgaavpdpgeftdedtallaaadall
ervrehfdvpamhlaleaiwsvlgaanryfsaqepwvlrksdaaedqqrfrtvlyttlev
vriaslllqpvmpestaklldllgqptderdfsaianrikpgtslpapsgifpryq