PDB entry 2wp9

View 2wp9 on RCSB PDB site
Description: crystal structure of the e. coli succinate:quinone oxidoreductase (sqr) sdhb his207thr mutant
Class: oxidoreductase
Keywords: cell inner membrane, tricarboxylic acid cycle, metal-binding, transmembrane, flavoprotein, oxidoreductase, electron transport
Deposited on 2009-08-03, released 2010-08-25
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-04-13, with a file datestamp of 2011-04-08.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.19192
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Succinate dehydrogenase flavoprotein subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2wp9a1, d2wp9a2, d2wp9a3
  • Chain 'B':
    Compound: succinate dehydrogenase iron-sulfur subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07014 (0-237)
      • engineered mutation (206)
    Domains in SCOPe 2.07: d2wp9b1, d2wp9b2
  • Chain 'C':
    Compound: succinate dehydrogenase cytochrome b556 subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2wp9c_
  • Chain 'D':
    Compound: succinate dehydrogenase hydrophobic membrane anchor subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2wp9d_
  • Chain 'E':
    Compound: Succinate dehydrogenase flavoprotein subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2wp9e1, d2wp9e2, d2wp9e3
  • Chain 'F':
    Compound: succinate dehydrogenase iron-sulfur subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07014 (0-237)
      • engineered mutation (206)
    Domains in SCOPe 2.07: d2wp9f1, d2wp9f2
  • Chain 'G':
    Compound: succinate dehydrogenase cytochrome b556 subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2wp9g_
  • Chain 'H':
    Compound: succinate dehydrogenase hydrophobic membrane anchor subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2wp9h_
  • Chain 'I':
    Compound: Succinate dehydrogenase flavoprotein subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2wp9i1, d2wp9i2, d2wp9i3
  • Chain 'J':
    Compound: succinate dehydrogenase iron-sulfur subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07014 (0-237)
      • engineered mutation (206)
    Domains in SCOPe 2.07: d2wp9j1, d2wp9j2
  • Chain 'K':
    Compound: succinate dehydrogenase cytochrome b556 subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2wp9k_
  • Chain 'L':
    Compound: succinate dehydrogenase hydrophobic membrane anchor subunit
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2wp9l_
  • Heterogens: FAD, TEO, NA, FES, SF4, F3S, HEM, CBE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2wp9A (A:)
    mklpvrefdavvigaggagmraalqisqsgqtcallskvfptrshtvsaqggitvalgnt
    hednwewhmydtvkgsdyigdqdaieymcktgpeailelehmglpfsrlddgriyqrpfg
    gqsknfggeqaartaaaadrtghallhtlyqqnlknhttifsewyaldlvknqdgavvgc
    talcietgevvyfkaratvlatggagriyqsttnahintgdgvgmairagvpvqdmemwq
    fhptgiagagvlvtegcrgeggyllnkhgerfmeryapnakdlagrdvvarsimieireg
    rgcdgpwgphaklkldhlgkevlesrlpgilelsrtfahvdpvkepipviptchymmggi
    ptkvtgqaltvnekgedvvvpglfavgeiacvsvhganrlggnslldlvvfgraaglhlq
    esiaeqgalrdasesdveasldrlnrwnnnrngedpvairkalqecmqhnfsvfregdam
    akgleqlkvirerlknarlddtssefntqrvecleldnlmetayatavsanfrtesrgah
    srfdfpdrddenwlchslylpesesmtrrsvnmepklrpafppkirty
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2wp9B (B:)
    mrlefsiyrynpdvddaprmqdytleadegrdmmlldaliqlkekdpslsfrrscregvc
    gsdglnmngknglacitpisalnqpgkkivirplpglpvirdlvvdmgqfyaqyekikpy
    llnngqnpparehlqmpeqrekldglyecilcaccstscpsfwwnpdkfigpagllaayr
    flidsrdtetdsrldglsdafsvfrctsimncvsvcpkglnptraighiksmllqrna
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2wp9C (C:)
    mirnvkkqrpvnldlqtirfpitaiasilhrvsgvitfvavgillwllgtslsspegfeq
    asaimgsffvkfimwgiltalayhvvvgirhmmmdfgyleetfeagkrsakisfvitvvl
    sllagvlvw
    

    Sequence, based on observed residues (ATOM records): (download)
    >2wp9C (C:)
    qrpvnldlqtirfpitaiasilhrvsgvitfvavgillwllgtslsspegfeqasaimgs
    ffvkfimwgiltalayhvvvgirhmmmdfgyleetfeagkrsakisfvitvvlsllagvl
    vw
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2wp9D (D:)
    mvsnasalgrngvhdfilvrataivltlyiiymvgffatsgeltyevwigffasaftkvf
    tllalfsilihawigmwqvltdyvkplalrlmlqlvivvalvvyviygfvvvwgv
    

    Sequence, based on observed residues (ATOM records): (download)
    >2wp9D (D:)
    ngvhdfilvrataivltlyiiymvgffatsgeltyevwigffasaftkvftllalfsili
    hawigmwqvltdyvkplalrlmlqlvivvalvvyviygfvvvwgv
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2wp9E (E:)
    mklpvrefdavvigaggagmraalqisqsgqtcallskvfptrshtvsaqggitvalgnt
    hednwewhmydtvkgsdyigdqdaieymcktgpeailelehmglpfsrlddgriyqrpfg
    gqsknfggeqaartaaaadrtghallhtlyqqnlknhttifsewyaldlvknqdgavvgc
    talcietgevvyfkaratvlatggagriyqsttnahintgdgvgmairagvpvqdmemwq
    fhptgiagagvlvtegcrgeggyllnkhgerfmeryapnakdlagrdvvarsimieireg
    rgcdgpwgphaklkldhlgkevlesrlpgilelsrtfahvdpvkepipviptchymmggi
    ptkvtgqaltvnekgedvvvpglfavgeiacvsvhganrlggnslldlvvfgraaglhlq
    esiaeqgalrdasesdveasldrlnrwnnnrngedpvairkalqecmqhnfsvfregdam
    akgleqlkvirerlknarlddtssefntqrvecleldnlmetayatavsanfrtesrgah
    srfdfpdrddenwlchslylpesesmtrrsvnmepklrpafppkirty
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2wp9F (F:)
    mrlefsiyrynpdvddaprmqdytleadegrdmmlldaliqlkekdpslsfrrscregvc
    gsdglnmngknglacitpisalnqpgkkivirplpglpvirdlvvdmgqfyaqyekikpy
    llnngqnpparehlqmpeqrekldglyecilcaccstscpsfwwnpdkfigpagllaayr
    flidsrdtetdsrldglsdafsvfrctsimncvsvcpkglnptraighiksmllqrna
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >2wp9G (G:)
    mirnvkkqrpvnldlqtirfpitaiasilhrvsgvitfvavgillwllgtslsspegfeq
    asaimgsffvkfimwgiltalayhvvvgirhmmmdfgyleetfeagkrsakisfvitvvl
    sllagvlvw
    

    Sequence, based on observed residues (ATOM records): (download)
    >2wp9G (G:)
    qrpvnldlqtirfpitaiasilhrvsgvitfvavgillwllgtslsspegfeqasaimgs
    ffvkfimwgiltalayhvvvgirhmmmdfgyleetfeagkrsakisfvitvvlsllagvl
    vw
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >2wp9H (H:)
    mvsnasalgrngvhdfilvrataivltlyiiymvgffatsgeltyevwigffasaftkvf
    tllalfsilihawigmwqvltdyvkplalrlmlqlvivvalvvyviygfvvvwgv
    

    Sequence, based on observed residues (ATOM records): (download)
    >2wp9H (H:)
    ngvhdfilvrataivltlyiiymvgffatsgeltyevwigffasaftkvftllalfsili
    hawigmwqvltdyvkplalrlmlqlvivvalvvyviygfvvvwgv
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2wp9I (I:)
    mklpvrefdavvigaggagmraalqisqsgqtcallskvfptrshtvsaqggitvalgnt
    hednwewhmydtvkgsdyigdqdaieymcktgpeailelehmglpfsrlddgriyqrpfg
    gqsknfggeqaartaaaadrtghallhtlyqqnlknhttifsewyaldlvknqdgavvgc
    talcietgevvyfkaratvlatggagriyqsttnahintgdgvgmairagvpvqdmemwq
    fhptgiagagvlvtegcrgeggyllnkhgerfmeryapnakdlagrdvvarsimieireg
    rgcdgpwgphaklkldhlgkevlesrlpgilelsrtfahvdpvkepipviptchymmggi
    ptkvtgqaltvnekgedvvvpglfavgeiacvsvhganrlggnslldlvvfgraaglhlq
    esiaeqgalrdasesdveasldrlnrwnnnrngedpvairkalqecmqhnfsvfregdam
    akgleqlkvirerlknarlddtssefntqrvecleldnlmetayatavsanfrtesrgah
    srfdfpdrddenwlchslylpesesmtrrsvnmepklrpafppkirty
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2wp9J (J:)
    mrlefsiyrynpdvddaprmqdytleadegrdmmlldaliqlkekdpslsfrrscregvc
    gsdglnmngknglacitpisalnqpgkkivirplpglpvirdlvvdmgqfyaqyekikpy
    llnngqnpparehlqmpeqrekldglyecilcaccstscpsfwwnpdkfigpagllaayr
    flidsrdtetdsrldglsdafsvfrctsimncvsvcpkglnptraighiksmllqrna
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >2wp9K (K:)
    mirnvkkqrpvnldlqtirfpitaiasilhrvsgvitfvavgillwllgtslsspegfeq
    asaimgsffvkfimwgiltalayhvvvgirhmmmdfgyleetfeagkrsakisfvitvvl
    sllagvlvw
    

    Sequence, based on observed residues (ATOM records): (download)
    >2wp9K (K:)
    qrpvnldlqtirfpitaiasilhrvsgvitfvavgillwllgtslsspegfeqasaimgs
    ffvkfimwgiltalayhvvvgirhmmmdfgyleetfeagkrsakisfvitvvlsllagvl
    vw
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >2wp9L (L:)
    mvsnasalgrngvhdfilvrataivltlyiiymvgffatsgeltyevwigffasaftkvf
    tllalfsilihawigmwqvltdyvkplalrlmlqlvivvalvvyviygfvvvwgv
    

    Sequence, based on observed residues (ATOM records): (download)
    >2wp9L (L:)
    ngvhdfilvrataivltlyiiymvgffatsgeltyevwigffasaftkvftllalfsili
    hawigmwqvltdyvkplalrlmlqlvivvalvvyviygfvvvwgv