PDB entry 2w8l
View 2w8l on RCSB PDB site
Description: y-family DNA polymerase dpo4 bypassing n2-naphthyl-guanine adduct in anti orientation
Class: transferase/DNA
Keywords: DNA-DIRECTED DNA POLYMERASE, DNA, DPO4, ADDUCT, N2-ALKYL, MAGNESIUM, TRANSFERASE, METAL-BINDING, MUTATOR PROTEIN, DNA REPLICATION, NUCLEOTIDYLTRANSFERASE, COMPLEX, POLYMERASE, DNA DAMAGE, DNA REPAIR, DNA-BINDING, TRANSFERASE/DNA, TRANSFERASE-DNA complex
Deposited on
2009-01-16, released
2009-01-27
The last revision prior to the SCOPe 2.08 freeze date was dated
2010-08-25, with a file datestamp of
2010-08-20.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.226
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase IV
Species: SULFOLOBUS SOLFATARICUS [TaxId:273057]
Database cross-references and differences (RAF-indexed):
- PDB 2W8L (Start-5)
- Uniprot Q97W02 (6-End)
Domains in SCOPe 2.08: d2w8la1, d2w8la2, d2w8la3 - Chain 'P':
Compound: 5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap *tp*tp*cp*doc)-3'
- Chain 'T':
Compound: 5'-d(*tp*cp*ap*cp*n2gp*gp*ap*ap*tp*cp *cp*tp*tp*cp*cp*cp*cp*c)-3'
- Heterogens: DGT, MG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2w8lA (A:)
hhhhhhmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfg
vkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdk
vrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrl
ireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeyn
epirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedld
ivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
Sequence, based on observed residues (ATOM records): (download)
>2w8lA (A:)
hmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagi
piveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyr
eaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireld
iadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirt
rvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrg
rtfphgisketaysesvkllqkileederkirrigvrfskfie
- Chain 'P':
No sequence available.
- Chain 'T':
No sequence available.