PDB entry 2vwt

View 2vwt on RCSB PDB site
Description: crystal structure of yfau, a metal ion dependent class II aldolase from escherichia coli k12 - mg-pyruvate product complex
Class: lyase
Keywords: lyase, (beta/alpha)8 barrel, 2-keto-3-deoxy sugar aldolase, escherichia coli k-12 protein yfau, degradation of homoprotocatechuate, pyruvate, class II aldolase
Deposited on 2008-06-26, released 2008-09-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-31.
Experiment type: XRAY
Resolution: 1.93 Å
R-factor: 0.169
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: yfau, 2-keto-3-deoxy sugar aldolase
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vwta_
  • Chain 'B':
    Compound: yfau, 2-keto-3-deoxy sugar aldolase
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vwtb_
  • Chain 'C':
    Compound: yfau, 2-keto-3-deoxy sugar aldolase
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vwtc_
  • Heterogens: MG, PYR, PO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2vwtA (A:)
    mnallsnpfkerlrkgevqiglwlssttaymaeiaatsgydwllidgehapntiqdlyhq
    lqavapyasqpvirpvegskplikqvldigaqtllipmvdtaeqarqvvsatryppyger
    gvgasvaraarwgrienymaqvndslcllvqvesktaldnldeildvegidgvfigpadl
    saslgypdnaghpevqriietsirriraagkaagflavapdmaqqclawganfvavgvdt
    mlysdaldqrlamfksgkngprikgsy
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vwtA (A:)
    mnallsnpfkerlrkgevqiglwlssttaymaeiaatsgydwllidgehapntiqdlyhq
    lqavapyasqpvirpvegskplikqvldigaqtllipmvdtaeqarqvvsatryppyger
    gvgasvaraarwgrienymaqvndslcllvqvesktaldnldeildvegidgvfigpadl
    saslgypdnaghpevqriietsirriraagkaagflavapdmaqqclawganfvavgvdt
    mlysdaldqrlamfks
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2vwtB (B:)
    mnallsnpfkerlrkgevqiglwlssttaymaeiaatsgydwllidgehapntiqdlyhq
    lqavapyasqpvirpvegskplikqvldigaqtllipmvdtaeqarqvvsatryppyger
    gvgasvaraarwgrienymaqvndslcllvqvesktaldnldeildvegidgvfigpadl
    saslgypdnaghpevqriietsirriraagkaagflavapdmaqqclawganfvavgvdt
    mlysdaldqrlamfksgkngprikgsy
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vwtB (B:)
    mnallsnpfkerlrkgevqiglwlssttaymaeiaatsgydwllidgehapntiqdlyhq
    lqavapyasqpvirpvegskplikqvldigaqtllipmvdtaeqarqvvsatryppyger
    gvgasvaraarwgrienymaqvndslcllvqvesktaldnldeildvegidgvfigpadl
    saslgypdnaghpevqriietsirriraagkaagflavapdmaqqclawganfvavgvdt
    mlysdaldqrlamfks
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2vwtC (C:)
    mnallsnpfkerlrkgevqiglwlssttaymaeiaatsgydwllidgehapntiqdlyhq
    lqavapyasqpvirpvegskplikqvldigaqtllipmvdtaeqarqvvsatryppyger
    gvgasvaraarwgrienymaqvndslcllvqvesktaldnldeildvegidgvfigpadl
    saslgypdnaghpevqriietsirriraagkaagflavapdmaqqclawganfvavgvdt
    mlysdaldqrlamfksgkngprikgsy
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vwtC (C:)
    mnallsnpfkerlrkgevqiglwlssttaymaeiaatsgydwllidgehapntiqdlyhq
    lqavapyasqpvirpvegskplikqvldigaqtllipmvdtaeqarqvvsatryppyger
    gvgasvaraarwgrienymaqvndslcllvqvesktaldnldeildvegidgvfigpadl
    saslgypdnaghpevqriietsirriraagkaagflavapdmaqqclawganfvavgvdt
    mlysdaldqrlamfks