PDB entry 2vur

View 2vur on RCSB PDB site
Description: Chemical dissection of the link between Streptozotocin, O-GlcNAc and pancreatic cell death
Class: hydrolase
Keywords: hydrolase, streptozotocin (stz), o-glcnac hydrolase (oga), glycosidase
Deposited on 2008-05-29, released 2009-02-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: O-GlcNAcase nagJ
    Species: Clostridium perfringens [TaxId:1502]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vura1, d2vura2, d2vura3
  • Chain 'B':
    Compound: O-GlcNAcase nagJ
    Species: Clostridium perfringens [TaxId:1502]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2vurb1, d2vurb2, d2vurb3
  • Heterogens: YX1, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2vurA (A:)
    vgpktgeenqvlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalrefltann
    ieinsendpnsttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkdgd
    gtfygvqtfkqlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygenkl
    ntyiyapkddpyhrekwrepypesemqrmqelinasaenkvdfvfgispgidirfdgdag
    eedfnhlitkaeslydmgvrsfaiywddiqdksaakhaqvlnrfneefvkakgdvkplit
    vpteydtgamvsngqpraytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiynrn
    mavwwnypvtdyfkgklalgpmhgldkglnqyvdfftvnpmehaelskisihtaadyswn
    mdnydydkawnraidmlygdlaedmkvfanhstrmdnktwaksgredapelrakmdelwn
    klsskedasalieelygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkasld
    mivaqlnedteayesakeiaqnklntalssfavisekvaqsfiqealsfdltli
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vurA (A:)
    vlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalrefltannieinsendpn
    sttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkdgdgtfygvqtfk
    qlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygenklntyiyapkdd
    pyhrekwrepypesemqrmqelinasaenkvdfvfgispgidirfdgdageedfnhlitk
    aeslydmgvrsfaiywddiqdksaakhaqvlnrfneefvkakgdvkplitvpteydtgam
    vsngqpraytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiynrnmavwwnypvt
    dyfkgklalgpmhgldkglnqyvdfftvnpmehaelskisihtaadyswnmdnydydkaw
    nraidmlygdlaedmkvfanhstrmdnktwaksgredapelrakmdelwnklsskedasa
    lieelygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkasldmivaqlnedt
    eayesakeiaqnklntalssfavisekvaqsfiqealsfdltli
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2vurB (B:)
    vgpktgeenqvlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalrefltann
    ieinsendpnsttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkdgd
    gtfygvqtfkqlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygenkl
    ntyiyapkddpyhrekwrepypesemqrmqelinasaenkvdfvfgispgidirfdgdag
    eedfnhlitkaeslydmgvrsfaiywddiqdksaakhaqvlnrfneefvkakgdvkplit
    vpteydtgamvsngqpraytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiynrn
    mavwwnypvtdyfkgklalgpmhgldkglnqyvdfftvnpmehaelskisihtaadyswn
    mdnydydkawnraidmlygdlaedmkvfanhstrmdnktwaksgredapelrakmdelwn
    klsskedasalieelygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkasld
    mivaqlnedteayesakeiaqnklntalssfavisekvaqsfiqealsfdltli
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vurB (B:)
    vlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalrefltannieinsendpn
    sttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkdgdgtfygvqtfk
    qlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygenklntyiyapkdd
    pyhrekwrepypesemqrmqelinasaenkvdfvfgispgidirfdgdageedfnhlitk
    aeslydmgvrsfaiywddiqdksaakhaqvlnrfneefvkakgdvkplitvpteydtgam
    vsngqpraytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiynrnmavwwnypvt
    dyfkgklalgpmhgldkglnqyvdfftvnpmehaelskisihtaadyswnmdnydydkaw
    nraidmlygdlaedmkvfanhstrmdnktwaksgredapelrakmdelwnklsskedasa
    lieelygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkasldmivaqlnedt
    eayesakeiaqnklntalssfavisekvaqsfiqealsfdltli