PDB entry 2vlm

View 2vlm on RCSB PDB site
Description: the structural dynamics and energetics of an immunodominant T-cell receptor are programmed by its vbeta domain
Class: immune system
Keywords: immune system, host-virus interaction, immune system-receptor-complex, immunodominance, immunoglobulin domain, tcr, MHC, flu, MHC I, T-cell, complex, membrane, receptor, immune response
Deposited on 2008-01-15, released 2008-01-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-31.
Experiment type: XRAY
Resolution: 1.98 Å
R-factor: 0.208
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'D':
    Compound: jm22 tcr alpha chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VLM
    Domains in SCOPe 2.07: d2vlmd1, d2vlmd2
  • Chain 'E':
    Compound: jm22 tcr beta chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VLM (Start-243)
    Domains in SCOPe 2.07: d2vlme1, d2vlme2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2vlmD (D:)
    mqlleqspqflsiqegenltvycnsssvfsslqwyrqepgegpvllvtvvtggevkklkr
    ltfqfgdarkdsslhitaaqpgdtglylcagagsqgnlifgkgtklsvkpniqnpdpavy
    qlrdskssdksvclftdfdsqtnvsqskdsdvyitdktvldmrsmdfksnsavawsnksd
    facanafnnsiipedtffpsk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vlmD (D:)
    qlleqspqflsiqegenltvycnsssvfsslqwyrqepgegpvllvtvvtggevkklkrl
    tfqfgdarkdsslhitaaqpgdtglylcagagsqgnlifgkgtklsvkpniqnpdpavyq
    lrdskssdksvclftdfdsqtnvkdsdvyitdsnsavawsnksdfacanafnnsiipedt
    ffps
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >2vlmE (E:)
    mvdggitqspkylfrkegqnvtlsceqnlnhdamywyrqdpgqglrliyysqivndfqkg
    diaegysvsrekkesfpltvtsaqknptafylcasssrssyeqyfgpgtrltvtedlknv
    fppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvstdpqplkeq
    palndsryslssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeaw
    grad
    

    Sequence, based on observed residues (ATOM records): (download)
    >2vlmE (E:)
    gitqspkylfrkegqnvtlsceqnlnhdamywyrqdpgqglrliyysqivndfqkgdiae
    gysvsrekkesfpltvtsaqknptafylcasssrssyeqyfgpgtrltvtedlknvfppe
    vavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvstdpqplkeqpaln
    dsryslssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgrad