SCOPe 2.05: Structural Classification of Proteins

PDB entry 2vho

View 2vho on RCSB PDB site
Description: Structure of PDF binding helix in complex with the ribosome (part 3 of 4)
Class: ribosome
Keywords: translation, peptide deformylase, RNA-protein complex, ribosomal protein, ribonucleoprotein, 30s ribosomal subunit, antibiotic resistance, ribosome, nascent chain processing, RNA-binding, translation regulation, tRNA-binding, protein biosynthesis
Deposited on 2007-11-22, released 2008-02-26
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: XRAY
Resolution: 3.74 Å
R-factor: 0.259
AEROSPACI score: 0.02 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: 16S ribosomal RNA
Species: Escherichia coli [TaxId:562]
Chain 'B':
Compound: 30S ribosomal protein S2
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7V1
Domains in SCOPe 2.05: d2vhob1
Chain 'C':
Compound: 30S ribosomal protein S3
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7V4 (0-End)
Domains in SCOPe 2.05: d2vhoc1, d2vhoc2
Chain 'D':
Compound: 30S ribosomal protein S4
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot Q0TCG5 (0-204)
Domains in SCOPe 2.05: d2vhod1
Chain 'E':
Compound: 30S ribosomal protein S5
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7W1
Domains in SCOPe 2.05: d2vhoe1, d2vhoe2
Chain 'F':
Compound: 30S ribosomal protein S6
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A4D0 (0-End)
- PDB 2VHO
Domains in SCOPe 2.05: d2vhof1
Chain 'G':
Compound: 30S ribosomal protein S7
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P66606
- PDB 2VHO
Domains in SCOPe 2.05: d2vhog1
Chain 'H':
Compound: 30S ribosomal protein S8
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot A1AGJ5 (0-128)
Domains in SCOPe 2.05: d2vhoh1
Chain 'I':
Compound: 30S ribosomal protein S9
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7X3 (Start-128)
Domains in SCOPe 2.05: d2vhoi1
Chain 'J':
Compound: 30S ribosomal protein S10
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7R5 (Start-102)
Domains in SCOPe 2.05: d2vhoj1
Chain 'K':
Compound: 30S ribosomal protein S11
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot A1AGI8 (Start-127)
Domains in SCOPe 2.05: d2vhok1
Chain 'L':
Compound: 30S ribosomal protein S12
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7S3 (0-122)
Domains in SCOPe 2.05: d2vhol1
Chain 'M':
Compound: 30S ribosomal protein S13
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7T1 (0-End)
Domains in SCOPe 2.05: d2vhom1
Chain 'N':
Compound: 30S ribosomal protein S14
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0AG59 (0-99)
Domains in SCOPe 2.05: d2vhon1
Chain 'O':
Compound: 30S ribosomal protein S15
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8X9M2 (Start-88)
Domains in SCOPe 2.05: d2vhoo1
Chain 'P':
Compound: 30S ribosomal protein S16
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7T3 (0-81)
Domains in SCOPe 2.05: d2vhop1
Chain 'Q':
Compound: 30S ribosomal protein S17
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot Q1R616 (Start-82)
Domains in SCOPe 2.05: d2vhoq1
Chain 'R':
Compound: 30S ribosomal protein S18
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7T7 (Start-73)
Domains in SCOPe 2.05: d2vhor1
Chain 'S':
Compound: 30S ribosomal protein S19
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot Q0TCE5
Domains in SCOPe 2.05: d2vhos1
Chain 'T':
Compound: 30S ribosomal protein S20
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot Q0TLW7 (Start-85)
Domains in SCOPe 2.05: d2vhot1
Chain 'U':
Compound: 30S ribosomal protein S21
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P68680
Domains in SCOPe 2.05: d2vhou1
Heterogens: MG, HOH

PDB Chain Sequences:

Chain 'A':
No sequence available.

Chain 'B':
Sequence, based on SEQRES records: (download)

>2vhoB (B:)
atvsmrdmlkagvhfghqtrywnpkmkpfifgarnkvhiinlektvpmfnealaelnkia
srkgkilfvgtkraaseavkdaalscdqffvnhrwlggmltnwktvrqsikrlkdletqs
qdgtfdkltkkealmrtreleklenslggikdmgglpdalfvidadhehiaikeannlgi
pvfaivdtnsdpdgvdfvipgnddairavtlylgavaatvregrsqdlasqaeesfveae