SCOPe 2.05: Structural Classification of Proteins

PDB entry 2vdi

View 2vdi on RCSB PDB site
Description: crystal structure of chlamydomonas reinhardtii rubisco with a large-subunit c192s mutation
Class: lyase
Keywords: vicinal cysteines, co2/o2 specificity, photosynthesis, transit peptide, photorespiration, metal-binding, hydroxylation, oxidoreductase, methylation, chloroplast, calvin cycle, monooxygenase, lyase, rubisco, plastid, magnesium, acetylation, carbon dioxide fixation
Deposited on 2007-10-09, released 2008-11-04
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.206
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (191)
Domains in SCOPe 2.05: d2vdia1, d2vdia2
Chain 'B':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (191)
Domains in SCOPe 2.05: d2vdib1, d2vdib2
Chain 'C':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (191)
Domains in SCOPe 2.05: d2vdic1, d2vdic2
Chain 'D':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (191)
Domains in SCOPe 2.05: d2vdid1, d2vdid2
Chain 'E':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (191)
Domains in SCOPe 2.05: d2vdie1, d2vdie2
Chain 'F':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (191)
Domains in SCOPe 2.05: d2vdif1, d2vdif2
Chain 'G':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (191)
Domains in SCOPe 2.05: d2vdig1, d2vdig2
Chain 'H':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (191)
Domains in SCOPe 2.05: d2vdih1, d2vdih2
Chain 'I':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.05: d2vdii_
Chain 'J':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.05: d2vdij_
Chain 'K':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.05: d2vdik_
Chain 'L':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.05: d2vdil_
Chain 'M':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.05: d2vdim_
Chain 'N':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.05: d2vdin_
Chain 'O':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.05: d2vdio_
Chain 'P':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.05: d2vdip_
Heterogens: MG, CAP, EDO, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>2vdiA (A:)
mvpqtetkagagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaae
sstgtwttvwtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsi
vgnvfgfkalralrledlrippayvktfvgpphgiqverdklnkygrgllgctikpklgl
saknygravyeslrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghyl
natagtceemmkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhav
idrqrnhgihfrvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsr
giyftqdwcsmpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaan
rvaleactqarnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl