PDB entry 2vd4
View 2vd4 on RCSB PDB site
Description: structure of small-molecule inhibitor of glmu from haemophilus influenzae reveals an allosteric binding site
Class: transferase
Keywords: glmu, inhibitor, magnesium, cell shape, peptidoglycan synthesis, allosteric, transferase, active site, metal-binding, cell wall biogenesis/degradation, multifunctional enzyme, nucleotidyltransferase, acyltransferase, uridyltransferase
Deposited on
2007-09-28, released
2008-01-15
The last revision prior to the SCOPe 2.08 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-31.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.183
AEROSPACI score: 0.49
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Bifunctional protein glmU
Species: Haemophilus influenzae [TaxId:727]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2vd4a1, d2vd4a2 - Heterogens: P21, SO4, PG4, PGE, MG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2vd4A (A:)
mtkkalsavilaagkgtrmysdlpkvlhtiagkpmvkhvidtahqlgsenihliyghggd
lmrthlaneqvnwvlqteqlgtahavqqaapffkdnenivvlygdaplitketlekliea
kpengialltvnldnptgygriirengnvvaiveqkdanaeqlnikevntgvmvsdgasf
kkwlarvgnnnaqgeyyltdlialanqdncqvvavqatdvmevegannrlqlaaleryfq
nkqasklllegvmiydparfdlrgtlehgkdveidvnviiegnvklgdrvkigtgcvlkn
vvigndveikpysvledsivgekaaigpfsrlrpgaelaaethvgnfveikkstvgkgsk
vnhltyvgdseigsncnigagvitcnydgankfktiigddvfvgsdtqlvapvkvangat
igagttitrdvgenelvitrvaqrhiqgwqrpikkk
Sequence, based on observed residues (ATOM records): (download)
>2vd4A (A:)
kalsavilaagkgtrmysdlpkvlhtiagkpmvkhvidtahqlgsenihliyghggdlmr
thlaneqvnwvlqteqlgtahavqqaapffkdnenivvlygdaplitketleklieakpe
ngialltvnldnptgygriirengnvvaiveqkdanaeqlnikevntgvmvsdgasfkkw
larvgnnnaqgeyyltdlialanqdncqvvavqatdvmevegannrlqlaaleryfqnkq
asklllegvmiydparfdlrgtlehgkdveidvnviiegnvklgdrvkigtgcvlknvvi
gndveikpysvledsivgekaaigpfsrlrpgaelaaethvgnfveikkstvgkgskvnh
ltyvgdseigsncnigagvitcnydgankfktiigddvfvgsdtqlvapvkvangatiga
gttitrdvgenelvitrvaqrhiqgwqrpi