PDB entry 2v9j
View 2v9j on RCSB PDB site
Description: crystal structure of the regulatory fragment of mammalian ampk in complexes with mg.ATP-amp
Class: transferase
Keywords: ATP-binding, polymorphism, metal-binding, serine/threonine-protein kinase, kinase, magnesium, cbs domain, transferase, sterol biosynthesis, steroid biosynthesis, fatty acid biosynthesis, cholesterol biosynthesis, lipid synthesis, phosphorylation, nucleotide-binding
Deposited on
2007-08-23, released
2007-09-25
The last revision prior to the SCOPe 2.01 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.53 Å
R-factor: 0.225
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 5'-amp-activated protein kinase catalytic subunit alpha-1
Species: Rattus norvegicus [TaxId:10116]
Database cross-references and differences (RAF-indexed):
- PDB 2V9J
- Uniprot P54645 (4-156)
Domains in SCOPe 2.01: d2v9ja_ - Chain 'B':
Compound: 5'-amp-activated protein kinase subunit beta-2
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2v9jb_ - Chain 'E':
Compound: 5'-amp-activated protein kinase subunit gamma-1
Species: Rattus norvegicus [TaxId:10116]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2v9je1, d2v9je2 - Heterogens: ATP, AMP, MG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2v9jA (A:)
gsmawhlgirsqsrpndimaevcraikqldyewkvvnpyylrvrrknpvtstfskmslql
yqvdsrtylldfrsiddeiteaksgtatpqrsgsisnyrscqrsdsdaeaqgkpsevslt
ssvtsldsspvdvaprpgshtieffemcanlikilaq
Sequence, based on observed residues (ATOM records): (download)
>2v9jA (A:)
smawhlgirsqsrpndimaevcraikqldyewkvvnpyylrvrrknpvtstfskmslqly
qvdsrtylldfrsiddevaprpgshtieffemcanlikilaq
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2v9jB (B:)
mgpygqemyafrseerfksppilpphllqvilnkdtniscdpallpepnhvmlnhlyals
ikdsvmvlsathrykkkyvttllykpi
Sequence, based on observed residues (ATOM records): (download)
>2v9jB (B:)
gqemyafrseerfksppilpphllqvilnkdtnpnhvmlnhlyalsikdsvmvlsathry
kkkyvttllykpi
- Chain 'E':
Sequence, based on SEQRES records: (download)
>2v9jE (E:)
mesvaaesapapenehsqetpesnssvyttfmkshrcydliptssklvvfdtslqvkkaf
falvtngvraaplwdskkqsfvgmltitdfinilhryyksalvqiyeleehkietwrevy
lqdsfkplvcispnaslfdavsslirnkihrlpvidpesgntlyilthkrilkflklfit
efpkpefmsksleelqigtyaniamvrtttpvyvalgifvqhrvsalpvvdekgrvvdiy
skfdvinlaaektynnldvsvtkalqhrshyfegvlkcylhetleaiinrlveaevhrlv
vvdehdvvkgivslsdilqalvltggekkp
Sequence, based on observed residues (ATOM records): (download)
>2v9jE (E:)
snssvyttfmkshrcydliptssklvvfdtslqvkkaffalvtngvraaplwdskkqsfv
gmltitdfinilhryyksalvqiyeleehkietwrevylqdsfkplvcispnaslfdavs
slirnkihrlpvidpesgntlyilthkrilkflklfitefpkpefmsksleelqigtyan
iamvrtttpvyvalgifvqhrvsalpvvdekgrvvdiyskfdvinlaaektynnldvsvt
kalqhrshyfegvlkcylhetleaiinrlveaevhrlvvvdehdvvkgivslsdilqalv
ltgg