PDB entry 2v6b

View 2v6b on RCSB PDB site
Description: crystal structure of lactate dehydrogenase from deinococcus radiodurans (apo form)
Class: oxidoreductase
Keywords: oxidoreductase, radioresistance, lactate dehydrogenase, ldh, nad, cytoplasm, mesophilic, glycolysis
Deposited on 2007-07-16, released 2007-09-25
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.23
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: l-lactate dehydrogenase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2v6ba1, d2v6ba2
  • Chain 'B':
    Compound: l-lactate dehydrogenase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2v6bb1, d2v6bb2
  • Chain 'C':
    Compound: l-lactate dehydrogenase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2v6bc1, d2v6bc2
  • Chain 'D':
    Compound: l-lactate dehydrogenase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2v6bd1, d2v6bd2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2v6bA (A:)
mkvgvvgtgfvgstaafalvlrgscselvlvdrdedraqaeaediahaapvshgtrvwhg
ghseladaqvviltaganqkpgesrldlleknadifrelvpqitraapdavllvtsnpvd
lltdlatqlapgqpvigsgtvldsarfrhlmaqhagvdgthahgyvlgehgdsevlawss
amvagmpvadfmqaqnlpwneqvrakidegtrnaaasiiegkratyygigaalariteav
lrdrravltvsaptpeygvslslprvvgrqgvlstlhpkltgdeqqkleqsagvlrgfkq
qlgl

    Sequence, based on observed residues (ATOM records): (download) 
    >2v6bA (A:)
mkvgvvgtgfvgstaafalvlrgscselvlvdrdedraqaeaediahaapvshgtrvwhg
ghseladaqvviltalleknadifrelvpqitraapdavllvtsnpvdlltdlatqlapg
qpvigsgtvldsarfrhlmaqhagvdgthahgyvlgehgdsevlawssamvagmpvadfm
qaqnlpwneqvrakidegtrntyygigaalariteavlrdrravltvsaptpeygvslsl
prvvgrqgvlstlhpkltgdeqqkleqsagvlrg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2v6bB (B:)
mkvgvvgtgfvgstaafalvlrgscselvlvdrdedraqaeaediahaapvshgtrvwhg
ghseladaqvviltaganqkpgesrldlleknadifrelvpqitraapdavllvtsnpvd
lltdlatqlapgqpvigsgtvldsarfrhlmaqhagvdgthahgyvlgehgdsevlawss
amvagmpvadfmqaqnlpwneqvrakidegtrnaaasiiegkratyygigaalariteav
lrdrravltvsaptpeygvslslprvvgrqgvlstlhpkltgdeqqkleqsagvlrgfkq
qlgl

    Sequence, based on observed residues (ATOM records): (download) 
    >2v6bB (B:)
mkvgvvgtgfvgstaafalvlrgscselvlvdrdedraqaeaediahaapvshgtrvwhg
ghseladaqvviltagaesrldlleknadifrelvpqitraapdavllvtsnpvdlltdl
atqlapgqpvigsgtvldsarfrhlmaqhagvdgthahgyvlgehgdsevlawssamvag
mpvadfmqaqnlpwneqvrakidegtrtyygigaalariteavlrdrravltvsaptpey
gvslslprvvgrqgvlstlhpkltgdeqqkleqsagvlrgfk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2v6bC (C:)
mkvgvvgtgfvgstaafalvlrgscselvlvdrdedraqaeaediahaapvshgtrvwhg
ghseladaqvviltaganqkpgesrldlleknadifrelvpqitraapdavllvtsnpvd
lltdlatqlapgqpvigsgtvldsarfrhlmaqhagvdgthahgyvlgehgdsevlawss
amvagmpvadfmqaqnlpwneqvrakidegtrnaaasiiegkratyygigaalariteav
lrdrravltvsaptpeygvslslprvvgrqgvlstlhpkltgdeqqkleqsagvlrgfkq
qlgl

    Sequence, based on observed residues (ATOM records): (download) 
    >2v6bC (C:)
mkvgvvgtgfvgstaafalvlrgscselvlvdrdedraqaeaediahaapvshgtrvwhg
ghseladaqvviltagsrldlleknadifrelvpqitraapdavllvtsnpvdlltdlat
qlapgqpvigsgtvldsarfrhlmaqhagvdgthahgyvlgehgdsevlawssamvagmp
vadfmqaqnlpwneqvrakidegtrntyygigaalariteavlrdrravltvsaptpeyg
vslslprvvgrqgvlstlhpkltgdeqqkleqsagvlrgfk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2v6bD (D:)
mkvgvvgtgfvgstaafalvlrgscselvlvdrdedraqaeaediahaapvshgtrvwhg
ghseladaqvviltaganqkpgesrldlleknadifrelvpqitraapdavllvtsnpvd
lltdlatqlapgqpvigsgtvldsarfrhlmaqhagvdgthahgyvlgehgdsevlawss
amvagmpvadfmqaqnlpwneqvrakidegtrnaaasiiegkratyygigaalariteav
lrdrravltvsaptpeygvslslprvvgrqgvlstlhpkltgdeqqkleqsagvlrgfkq
qlgl

    Sequence, based on observed residues (ATOM records): (download) 
    >2v6bD (D:)
mkvgvvgtgfvgstaafalvlrgscselvlvdrdedraqaeaediahaapvshgtrvwhg
ghseladaqvviltagarldlleknadifrelvpqitraapdavllvtsnpvdlltdlat
qlapgqpvigsgtvldsarfrhlmaqhagvdgthahgyvlgehgdsevlawssamvagmp
vadfmqaqnlpwneqvrakidegtrtyygigaalariteavlrdrravltvsaptpeygv
slslprvvgrqgvlstlhpkltgdeqqkleqsagvlrgf