PDB entry 2rib
View 2rib on RCSB PDB site
Description: Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with L-glycero-D-manno-heptose
Class: sugar binding protein
Keywords: surfactant protein; carbohydrate recognition; domain trimeric, sugar binding protein
Deposited on
2007-10-10, released
2008-01-15
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.186
AEROSPACI score: 0.52
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Pulmonary surfactant-associated protein D
Species: Homo sapiens [TaxId:9606]
Gene: SFTPD, PSPD, SFTP4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2riba1, d2riba2 - Chain 'B':
Compound: Pulmonary surfactant-associated protein D
Species: Homo sapiens [TaxId:9606]
Gene: SFTPD, PSPD, SFTP4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2ribb1, d2ribb2 - Chain 'C':
Compound: Pulmonary surfactant-associated protein D
Species: Homo sapiens [TaxId:9606]
Gene: SFTPD, PSPD, SFTP4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2ribc1, d2ribc2 - Heterogens: CA, GMH, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2ribA (A:)
amadigsdvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpft
eaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvys
nwapgepnddggsedcveiftngkwndracgekrlvvcef
Sequence, based on observed residues (ATOM records): (download)
>2ribA (A:)
slrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllctqag
gqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgepndd
ggsedcveiftngkwndracgekrlvvcef
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2ribB (B:)
amadigsdvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpft
eaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvys
nwapgepnddggsedcveiftngkwndracgekrlvvcef
Sequence, based on observed residues (ATOM records): (download)
>2ribB (B:)
vaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllctq
aggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgepn
ddggsedcveiftngkwndracgekrlvvcef
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2ribC (C:)
amadigsdvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpft
eaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvys
nwapgepnddggsedcveiftngkwndracgekrlvvcef
Sequence, based on observed residues (ATOM records): (download)
>2ribC (C:)
slrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllctqag
gqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgepndd
ggsedcveiftngkwndracgekrlvvcef