PDB entry 2r3y

View 2r3y on RCSB PDB site
Description: Crystal structure of the DegS protease in complex with the YWF activating peptide
Class: hydrolase/hydrolase activator
Keywords: reversible activation of a protease, catalytic triad, Hydrolase, Periplasm, Serine protease, hydrolase/hydrolase activator COMPLEX
Deposited on 2007-08-30, released 2007-11-27
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.204
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protease degS
    Species: Escherichia coli [TaxId:562]
    Gene: degS, hhoB, htrH
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AEE3 (1-End)
      • initiating methionine (0)
    Domains in SCOPe 2.01: d2r3ya1, d2r3ya2
  • Chain 'B':
    Compound: Protease degS
    Species: Escherichia coli [TaxId:562]
    Gene: degS, hhoB, htrH
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AEE3 (1-End)
      • initiating methionine (0)
    Domains in SCOPe 2.01: d2r3yb1, d2r3yb2
  • Chain 'C':
    Compound: Protease degS
    Species: Escherichia coli [TaxId:562]
    Gene: degS, hhoB, htrH
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AEE3 (1-End)
      • initiating methionine (0)
    Domains in SCOPe 2.01: d2r3yc1, d2r3yc2
  • Chain 'D':
    Compound: Synthetic peptide YWF
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 2R3Y (Start-9)
  • Chain 'E':
    Compound: Synthetic peptide YWF
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 2R3Y (Start-9)
  • Chain 'F':
    Compound: Synthetic peptide YWF
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 2R3Y (Start-9)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2r3yA (A:)
mtpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvinda
dqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignp
ynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfd
ksndgetpegigfaipfqlatkimdklirdgrvirgyigiggreiaplhaqgggidqlqg
ivvnevspdgpaanagiqvndliisvdnkpaisaletmdqvaeirpgsvipvvvmrddkq
ltlqvtiqeypatn

    Sequence, based on observed residues (ATOM records): (download) 
    >2r3yA (A:)
mtpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvinda
dqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignp
ynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfd
ksndgetpegigfaipfqlatkimdklirdgrvirgyigiggivvnevspdgpaanagiq
vndliisvdnkpatmdqvaeirpgsvipvvvlqvtiqeyp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2r3yB (B:)
mtpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvinda
dqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignp
ynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfd
ksndgetpegigfaipfqlatkimdklirdgrvirgyigiggreiaplhaqgggidqlqg
ivvnevspdgpaanagiqvndliisvdnkpaisaletmdqvaeirpgsvipvvvmrddkq
ltlqvtiqeypatn

    Sequence, based on observed residues (ATOM records): (download) 
    >2r3yB (B:)
mtpasynlavrraapavvnvynrglqleirtlgsgvimdqrgyiitnkhvindadqiiva
lqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignpynlgqt
itqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfdksndge
tpegigfaipfqlatkimdklirdgrvirgyigiggivvnevspdgpaanagiqvndlii
svdnkpatmdqvaeirpgsvipvvvlqvtiqeyp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2r3yC (C:)
mtpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvinda
dqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignp
ynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfd
ksndgetpegigfaipfqlatkimdklirdgrvirgyigiggreiaplhaqgggidqlqg
ivvnevspdgpaanagiqvndliisvdnkpaisaletmdqvaeirpgsvipvvvmrddkq
ltlqvtiqeypatn

    Sequence, based on observed residues (ATOM records): (download) 
    >2r3yC (C:)
mtpasynlavrraapavvnvynrglnqleirtlgsgvimdqrgyiitnkhvindadqiiv
alqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignpynlgq
titqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfdksndg
etpegigfaipfqlatkimdklirdgrvirgyigiggivvnevspdgpaanagiqvndli
isvdnkpatmdqvaeirpgsvipvvvlqvtiqeyp

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.