PDB entry 2qqi

View 2qqi on RCSB PDB site
Description: Crystal Structure of the b1b2 Domains from Human Neuropilin-1
Class: signaling protein
Keywords: VEGF receptor, semaphorin receptor, Angiogenesis, Developmental protein, Differentiation, Glycoprotein, Heparan sulfate, Membrane, Neurogenesis, Proteoglycan, Secreted, Transmembrane, HORMONE, SIGNALING PROTEIN
Deposited on 2007-07-26, released 2007-11-20
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.161
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Neuropilin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: NRP1, NRP, VEGF165R
    Database cross-references and differences (RAF-indexed):
    • Uniprot O14786 (4-317)
      • expression tag (3)
    Domains in SCOPe 2.06: d2qqia1, d2qqia2, d2qqia3
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2qqiA (A:)
gshmfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqv
dlgllrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnpt
dvvvavfpkplitrfvrikpatwetgismrfevygckitdypcsgmlgmvsglisdsqit
ssnqgdrnwmpenirlvtsrsgwalppaphsyinewlqidlgeekivrgiiiqggkhren
kvfmrkfkigysnngsdwkmimddskrkaksfegnnnydtpelrtfpalstrfiriyper
athgglglrmellgceve

    Sequence, based on observed residues (ATOM records): (download) 
    >2qqiA (A:)
mfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvdlg
llrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptdvv
vavfpkplitrfvrikpatwetgismrfevygckitdypcsgmlgmvsglisdsqitssn
qgdrnwmpenirlvtsrsgwalppaphsyinewlqidlgeekivrgiiiqggkhrenkvf
mrkfkigysnngsdwkmimddskrkaksfegnnnydtpelrtfpalstrfiriyperath
gglglrmellgceve