PDB entry 2qad
View 2qad on RCSB PDB site
Description: Structure of tyrosine-sulfated 412d antibody complexed with HIV-1 YU2 gp120 and CD4
Class: viral protein/immune system
Keywords: viral protein/immune system, viral protein-immune system complex
Deposited on
2007-06-14, released
2007-09-25
The last revision prior to the SCOPe 2.04 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: 0.202
AEROSPACI score: 0.19
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: envelope glycoprotein gp160
Species: Human immunodeficiency virus 1 [TaxId:11676]
Gene: ENV
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: T-cell surface glycoprotein cd4
Species: Homo sapiens [TaxId:9606]
Gene: CD4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2qadb1, d2qadb2 - Chain 'C':
Compound: anti-HIV-1 antibody 412d light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: anti-HIV-1 antibody 412d heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2qadd1, d2qadd2 - Chain 'E':
Compound: envelope glycoprotein gp160
Species: Human immunodeficiency virus 1 [TaxId:11676]
Gene: ENV
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: T-cell surface glycoprotein cd4
Species: Homo sapiens [TaxId:9606]
Gene: CD4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2qadf1, d2qadf2 - Chain 'G':
Compound: anti-HIV-1 antibody 412d light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: anti-HIV-1 antibody 412d heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2qadh1, d2qadh2 - Heterogens: NAG, MLA, EDO
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2qadB (B:)
kkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkgpsklndradsrrs
lwdqgnfpliiknlkiedsdtyicevedqkeevqllvfgltansdthllqgqsltltles
ppgsspsvqcrsprgkniqggktlsvsqlelqdsgtwtctvlqnqkkvefkidivvlafq
k
Sequence, based on observed residues (ATOM records): (download)
>2qadB (B:)
kkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkgpsklndradsrrs
lwdqgnfpliiknlkiedsdtyicevedqkeevqllvfgltansdthllqgqsltltles
ppgsspsvqcrsprgkniqggktlsvsqlelqdsgtwtctvlqnqkkvefkidivvla
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>2qadD (D:)
evqlvqsgaevkkpgssvkvsckasggtfsnyainwvrqapgqglewmggiipifniahy
aqrfqgrvsitadeststaymelsslrsedtavfycaspypndyndyapeegmswyfdlw
grgtlvtvspastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgv
htfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk
- Chain 'E':
No sequence available.
- Chain 'F':
Sequence, based on SEQRES records: (download)
>2qadF (F:)
kkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkgpsklndradsrrs
lwdqgnfpliiknlkiedsdtyicevedqkeevqllvfgltansdthllqgqsltltles
ppgsspsvqcrsprgkniqggktlsvsqlelqdsgtwtctvlqnqkkvefkidivvlafq
k
Sequence, based on observed residues (ATOM records): (download)
>2qadF (F:)
kkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkgpsklndradsrrs
lwdqgnfpliiknlkiedsdtyicevedqkeevqllvfgltansdthllqgqsltltles
ppgsspsvqcrsprgkniqggktlsvsqlelqdsgtwtctvlqnqkkvefkidivvlaf
- Chain 'G':
No sequence available.
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>2qadH (H:)
evqlvqsgaevkkpgssvkvsckasggtfsnyainwvrqapgqglewmggiipifniahy
aqrfqgrvsitadeststaymelsslrsedtavfycaspypndyndyapeegmswyfdlw
grgtlvtvspastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgv
htfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk