PDB entry 2q87

View 2q87 on RCSB PDB site
Description: The Crystal Structure of the Human IRp60 Ectodomain
Class: immune system
Keywords: All-beta, immunoglobulin, IG-SUPERFAMILY, IG-V, NKP44-LIKE, Natural killer Cell IG-LIKE RECEPTOR, inhibitory receptor, myelo-monocytic cells, negative regulation of leukocyte, negative regulation of natural killer cells, negative regulation of natural mast cells, membrane protein, irp60, cmrf35, irem, ncr, IMMUNE SYSTEM
Deposited on 2007-06-09, released 2007-07-03
The last revision prior to the SCOPe 2.03 freeze date was dated 2012-07-25, with a file datestamp of 2012-07-20.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.218
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CMRF35-H antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: CD300A, CMRF35H
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UGN4 (0-106)
      • engineered (2)
      • conflict (92)
    Domains in SCOPe 2.03: d2q87a_
  • Chain 'B':
    Compound: CMRF35-H antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: CD300A, CMRF35H
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UGN4 (Start-106)
      • conflict (92)
      • cloning artifact (107-109)
    Domains in SCOPe 2.03: d2q87b_
  • Chain 'C':
    Compound: CMRF35-H antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: CD300A, CMRF35H
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UGN4 (Start-106)
      • conflict (92)
      • cloning artifact (107-108)
    Domains in SCOPe 2.03: d2q87c_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2q87A (A:)
skartvagpvggslsvqcpyekehrtlnkywcrppqiflcdkivetkgsagkrngrvsir
dspanlsftvtlenlteedagtywcgvdtpwlqdfhdpvvevevsvfpas

    Sequence, based on observed residues (ATOM records): (download) 
    >2q87A (A:)
skartvagpvggslsvqcpyekehrtlnkywcrppqiflcdkivetkgsagkrngrvsir
dspanlsftvtlenlteedagtywcgvdtpwlqdfhdpvvevevsvf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2q87B (B:)
skartvagpvggslsvqcpyekehrtlnkywcrppqiflcdkivetkgsagkrngrvsir
dspanlsftvtlenlteedagtywcgvdtpwlqdfhdpvvevevsvfpas

    Sequence, based on observed residues (ATOM records): (download) 
    >2q87B (B:)
rtvagpvggslsvqcpyekehrtlnkywcrppqiflcdkivetkgsagkrngrvsirdsp
anlsftvtlenlteedagtywcgvdtpwlqdfhdpvvevevsvfpas

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2q87C (C:)
skartvagpvggslsvqcpyekehrtlnkywcrppqiflcdkivetkgsagkrngrvsir
dspanlsftvtlenlteedagtywcgvdtpwlqdfhdpvvevevsvfpas

    Sequence, based on observed residues (ATOM records): (download) 
    >2q87C (C:)
rtvagpvggslsvqcpyekehrtlnkywcrppqiflcdkivetkgsagkrngrvsirdsp
anlsftvtlenlteedagtywcgvdtpwlqdfhdpvvevevsvfpa