PDB entry 2q2u

View 2q2u on RCSB PDB site
Description: Structure of Chlorella virus DNA ligase-product DNA complex
Class: ligase/DNA
Keywords: ligase, product-complex, protein-DNA complex, ligase/DNA complex
Deposited on 2007-05-29, released 2007-07-10
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.249
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Chlorella virus DNA ligase
    Species: Paramecium bursaria Chlorella virus 1 [TaxId:10506]
    Gene: A544R
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d2q2ua1, d2q2ua2
  • Chain 'B':
    Compound: Chlorella virus DNA ligase
    Species: Paramecium bursaria Chlorella virus 1 [TaxId:10506]
    Gene: A544R
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d2q2ub1, d2q2ub2
  • Chain 'C':
    Compound: Chlorella virus DNA ligase
    Species: Paramecium bursaria Chlorella virus 1 [TaxId:10506]
    Gene: A544R
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d2q2uc1, d2q2uc2
  • Chain 'D':
    Compound: Chlorella virus DNA ligase
    Species: Paramecium bursaria Chlorella virus 1 [TaxId:10506]
    Gene: A544R
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d2q2ud1, d2q2ud2
  • Chain 'E':
    Compound: 5'-d(*tp*tp*cp*cp*gp*ap*tp*ap*gp*tp*gp*gp*gp*gp*tp*cp*gp*cp*ap*ap*t)-3'
    Species: synthetic, synthetic
  • Chain 'F':
    Compound: 5'-d(*ap*tp*tp*gp*cp*gp*ap*cp*(omc)p*cp*cp*ap*cp*tp*ap*tp*cp*gp*gp*ap*a)-3'
    Species: synthetic, synthetic
  • Chain 'G':
    Compound: 5'-d(*tp*tp*cp*cp*gp*ap*tp*ap*gp*tp*gp*gp*gp*gp*tp*cp*gp*cp*ap*ap*t)-3'
    Species: synthetic, synthetic
  • Chain 'H':
    Compound: 5'-d(*ap*tp*tp*gp*cp*gp*ap*cp*(omc)p*cp*cp*ap*cp*tp*ap*tp*cp*gp*gp*ap*a)-3'
    Species: synthetic, synthetic
  • Chain 'I':
    Compound: 5'-d(*tp*tp*cp*cp*gp*ap*tp*ap*gp*tp*gp*gp*gp*gp*tp*cp*gp*cp*ap*ap*t)-3'
    Species: synthetic, synthetic
  • Chain 'J':
    Compound: 5'-d(*ap*tp*tp*gp*cp*gp*ap*cp*(omc)p*cp*cp*ap*cp*tp*ap*tp*cp*gp*gp*ap*a)-3'
    Species: synthetic, synthetic
  • Chain 'K':
    Compound: 5'-d(*tp*tp*cp*cp*gp*ap*tp*ap*gp*tp*gp*gp*gp*gp*tp*cp*gp*cp*ap*ap*t)-3'
    Species: synthetic, synthetic
  • Chain 'L':
    Compound: 5'-d(*ap*tp*tp*gp*cp*gp*ap*cp*(omc)p*cp*cp*ap*cp*tp*ap*tp*cp*gp*gp*ap*a)-3'
    Species: synthetic, synthetic
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2q2uA (A:)
mghhhhhhhhhhssghiegrhmaitkpllaatleniedvqfpclatpkidgirsvkqtqm
lsrtfkpirnsvmnrlltellpegsdgeisiegatfqdttsavmtghkmynakfsyywfd
yvtddplkkyidrvedmknyitvhphilehaqvkiiplipveinnitellqyerdvlskg
fegvmirkpdgkykfgrstlkegillkmkqfkdaeatiismtalfkntntktkdnfgysk
rsthksgkveedvmgsievdydgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemg
skdcprfpvfigirheedr

    Sequence, based on observed residues (ATOM records): (download) 
    >2q2uA (A:)
maitkpllaatleniedvqfpclatpkidgirsvkqtqmlsrtfkpirnsvmnrlltell
pegsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyi
tvhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlk
egillkmkqfkdaeatiismtalfkntntktkdnfgyskrsthksgkveedvmgsievdy
dgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemgskdcprfpvfigir

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2q2uB (B:)
mghhhhhhhhhhssghiegrhmaitkpllaatleniedvqfpclatpkidgirsvkqtqm
lsrtfkpirnsvmnrlltellpegsdgeisiegatfqdttsavmtghkmynakfsyywfd
yvtddplkkyidrvedmknyitvhphilehaqvkiiplipveinnitellqyerdvlskg
fegvmirkpdgkykfgrstlkegillkmkqfkdaeatiismtalfkntntktkdnfgysk
rsthksgkveedvmgsievdydgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemg
skdcprfpvfigirheedr

    Sequence, based on observed residues (ATOM records): (download) 
    >2q2uB (B:)
maitkpllaatleniedvqfpclatpkidgirsvkqtqmlsrtfkpirnsvmnrlltell
pegsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyi
tvhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlk
egillkmkqfkdaeatiismtalfkntntktkdnfgyskrsthksgkveedvmgsievdy
dgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemgskdcprfpvfigir

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2q2uC (C:)
mghhhhhhhhhhssghiegrhmaitkpllaatleniedvqfpclatpkidgirsvkqtqm
lsrtfkpirnsvmnrlltellpegsdgeisiegatfqdttsavmtghkmynakfsyywfd
yvtddplkkyidrvedmknyitvhphilehaqvkiiplipveinnitellqyerdvlskg
fegvmirkpdgkykfgrstlkegillkmkqfkdaeatiismtalfkntntktkdnfgysk
rsthksgkveedvmgsievdydgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemg
skdcprfpvfigirheedr

    Sequence, based on observed residues (ATOM records): (download) 
    >2q2uC (C:)
maitkpllaatleniedvqfpclatpkidgirsvkqtqmlsrtfkpirnsvmnrlltell
pegsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyi
tvhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlk
egillkmkqfkdaeatiismtalfkntntktkdnfgyskrsthksgkveedvmgsievdy
dgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemgskdcprfpvfigir

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2q2uD (D:)
mghhhhhhhhhhssghiegrhmaitkpllaatleniedvqfpclatpkidgirsvkqtqm
lsrtfkpirnsvmnrlltellpegsdgeisiegatfqdttsavmtghkmynakfsyywfd
yvtddplkkyidrvedmknyitvhphilehaqvkiiplipveinnitellqyerdvlskg
fegvmirkpdgkykfgrstlkegillkmkqfkdaeatiismtalfkntntktkdnfgysk
rsthksgkveedvmgsievdydgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemg
skdcprfpvfigirheedr

    Sequence, based on observed residues (ATOM records): (download) 
    >2q2uD (D:)
maitkpllaatleniedvqfpclatpkidgirsvkqtqmlsrtfkpirnsvmnrlltell
pegsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyi
tvhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlk
egillkmkqfkdaeatiismtalfkntntktkdnfgyskrsthksgkveedvmgsievdy
dgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemgskdcprfpvfigir

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.