PDB entry 2ply
View 2ply on RCSB PDB site
Description: Structure of the mRNA binding fragment of elongation factor SelB in complex with SECIS RNA.
Class: translation/RNA
Keywords: protein-rna, complex, rna, winged helix, selb, SECIS, translation/RNA COMPLEX
Deposited on
2007-04-20, released
2007-11-06
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.23
AEROSPACI score: 0.26
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Selenocysteine-specific elongation factor
Species: Moorella thermoacetica [TaxId:1525]
Gene: selB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2plya1, d2plya2, d2plya3, d2plya4 - Chain 'B':
Compound: Selenocysteine-specific elongation factor
Species: Moorella thermoacetica [TaxId:1525]
Gene: selB
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: RNA (5'-r(*gp*gp*cp*gp*up*up*gp*cp*cp*gp*gp*up*cp*up*gp*gp*cp*ap*ap*cp*gp*cp*c)-3')
Species: synthetic, synthetic
- Chain 'E':
Compound: RNA (5'-r(*gp*gp*cp*gp*up*up*gp*cp*cp*gp*gp*up*cp*up*gp*gp*cp*ap*ap*cp*gp*cp*c)-3')
Species: synthetic, synthetic
- Heterogens: MG, CA, NA, CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2plyA (A:)
gspekilaqiiqehregldwqeaatraslsleetrkllqsmaaagqvtllrvendlyais
teryqawwqavtraleefhsryplrpglareelrsryfsrlparvyqalleewsregrlq
laantvalagftpsfsetqkkllkdledkyrvsrwqppwvkevagsfnldpseleellhy
lvregvlvkindefywhrqalgeareviknlastgpfglaeardalgssrkyvlplleyl
dqvkftrrvgdkrvvvgn
Sequence, based on observed residues (ATOM records): (download)
>2plyA (A:)
egldvtllrvdlyaisteryqawwqavtraleefhsryplrpglareelrsryfsrlpar
vyqalleewsregrlqlaantvalagftpsfsetqkkllkdledkyrvsrwqppwvkeva
gsfnldpseleellhylvregvlvkindefywhrqalgeareviknlastgpfglaeard
algssrkyvlplleyldqvkftrrvgdkrvvv
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'E':
No sequence available.