PDB entry 2pkr

View 2pkr on RCSB PDB site
Description: Crystal structure of (A+CTE)4 chimeric form of photosyntetic glyceraldehyde-3-phosphate dehydrogenase, complexed with NADP
Class: oxidoreductase
Keywords: chimeric protein, Rossman fold, NADP complex
Deposited on 2007-04-18, released 2007-06-19
The last revision prior to the SCOP 1.73 freeze date was dated 2007-06-19, with a file datestamp of 2007-06-15.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.249
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase Aor
    Species: Spinacia oleracea
    Gene: GAPA
    Domains in SCOP 1.73: d2pkra1, d2pkra2
  • Chain 'B':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase Aor
    Species: Spinacia oleracea
    Gene: GAPA
    Domains in SCOP 1.73: d2pkrb1, d2pkrb2
  • Chain 'C':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase Aor
    Species: Spinacia oleracea
    Gene: GAPA
    Domains in SCOP 1.73: d2pkrc1, d2pkrc2
  • Chain 'D':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase Aor
    Species: Spinacia oleracea
    Gene: GAPA
    Domains in SCOP 1.73: d2pkrd1, d2pkrd2
  • Chain 'H':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase Aor
    Species: Spinacia oleracea
    Gene: GAPA
    Domains in SCOP 1.73: d2pkrh1, d2pkrh2
  • Chain 'I':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase Aor
    Species: Spinacia oleracea
    Gene: GAPA
    Domains in SCOP 1.73: d2pkri1, d2pkri2
  • Chain 'L':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase Aor
    Species: Spinacia oleracea
    Gene: GAPA
    Domains in SCOP 1.73: d2pkrl1, d2pkrl2
  • Chain 'M':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase Aor
    Species: Spinacia oleracea
    Gene: GAPA
    Domains in SCOP 1.73: d2pkrm1, d2pkrm2
  • Chain 'O':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase Aor
    Species: Spinacia oleracea
    Gene: GAPA
    Domains in SCOP 1.73: d2pkro1, d2pkro2
  • Chain 'P':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase Aor
    Species: Spinacia oleracea
    Gene: GAPA
    Domains in SCOP 1.73: d2pkrp1, d2pkrp2
  • Chain 'Q':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase Aor
    Species: Spinacia oleracea
    Gene: GAPA
    Domains in SCOP 1.73: d2pkrq1, d2pkrq2
  • Chain 'R':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase Aor
    Species: Spinacia oleracea
    Gene: GAPA
    Domains in SCOP 1.73: d2pkrr1, d2pkrr2
  • Heterogens: SO4, NDP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2pkrA (A:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqglegsvasgdpledfckdnpadee
cklye

    Sequence, based on observed residues (ATOM records): (download) 
    >2pkrA (A:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2pkrB (B:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqglegsvasgdpledfckdnpadee
cklye

    Sequence, based on observed residues (ATOM records): (download) 
    >2pkrB (B:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2pkrC (C:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqglegsvasgdpledfckdnpadee
cklye

    Sequence, based on observed residues (ATOM records): (download) 
    >2pkrC (C:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2pkrD (D:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqglegsvasgdpledfckdnpadee
cklye

    Sequence, based on observed residues (ATOM records): (download) 
    >2pkrD (D:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwq

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2pkrH (H:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqglegsvasgdpledfckdnpadee
cklye

    Sequence, based on observed residues (ATOM records): (download) 
    >2pkrH (H:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwq

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >2pkrI (I:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqglegsvasgdpledfckdnpadee
cklye

    Sequence, based on observed residues (ATOM records): (download) 
    >2pkrI (I:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqg

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >2pkrL (L:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqglegsvasgdpledfckdnpadee
cklye

    Sequence, based on observed residues (ATOM records): (download) 
    >2pkrL (L:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwq

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >2pkrM (M:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqglegsvasgdpledfckdnpadee
cklye

    Sequence, based on observed residues (ATOM records): (download) 
    >2pkrM (M:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqg

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >2pkrO (O:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqglegsvasgdpledfckdnpadee
cklye

    Sequence, based on observed residues (ATOM records): (download) 
    >2pkrO (O:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqg

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >2pkrP (P:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqglegsvasgdpledfckdnpadee
cklye

    Sequence, based on observed residues (ATOM records): (download) 
    >2pkrP (P:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqg

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >2pkrQ (Q:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqglegsvasgdpledfckdnpadee
cklye

    Sequence, based on observed residues (ATOM records): (download) 
    >2pkrQ (Q:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqg

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >2pkrR (R:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqglegsvasgdpledfckdnpadee
cklye

    Sequence, based on observed residues (ATOM records): (download) 
    >2pkrR (R:)
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnascttnclapfvkvldqkfgiikgtmttth
sytgdqrlldashrdlrraraaclnivptstgaakavalvlpnlkgklngialrvptpnv
svvdlvvqvskktfaeevnaafresadnelkgilsvcdeplvsidfrctdvsstidsslt
mvmgddmvkviawydnewgysqrvvdladivankwqg