PDB entry 2pfn

View 2pfn on RCSB PDB site
Description: Na in the active site of DNA Polymerase lambda
Class: transferase, lyase/DNA
Keywords: DNA polymerase, DNA Repair, phosphoryl transfer reaction, manganese
Deposited on 2007-04-05, released 2007-05-15
The last revision prior to the SCOP 1.75 freeze date was dated 2007-09-04, with a file datestamp of 2007-08-31.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.213
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase lambda
    Species: HOMO SAPIENS
    Gene: POLL
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UGP5 (Start-334)
      • engineered (302)
    Domains in SCOP 1.75: d2pfna1, d2pfna2, d2pfna3
  • Chain 'D':
    Compound: Downstream Primer
  • Chain 'P':
    Compound: Primer
  • Chain 'T':
    Compound: Template
  • Heterogens: MG, NA, DUP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2pfnA (A:)
maqpssqkatnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeac
sipgigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsl
edirsqaslttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrr
gkatcgdvdvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlp
gpgrrhrrldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnt
hgakvgpgrvlptptekdvfrllglpyrepaerdw

    Sequence, based on observed residues (ATOM records): (download) 
    >2pfnA (A:)
nhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkrma
ekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqaslt
tqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdvdv
lithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrrld
iivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgakvgpgrv
lptptekdvfrllglpyrepaerdw

  • Chain 'D':
    No sequence available.

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.