PDB entry 2p1d

View 2p1d on RCSB PDB site
Description: Crystal structure of dengue methyltransferase in complex with GTP and S-Adenosyl-L-homocysteine
Class: viral protein,transferase
Keywords: VIZIER; Viral Enzymes Involved in Replication; Dengue virus methyltransferase; Structural Genomics; Marseilles Structural Genomics Program @ AFMB; MSGP, VIZIER. Viral Enzymes Involved in Replication
Deposited on 2007-03-05, released 2007-03-20
The last revision prior to the SCOP 1.75 freeze date was dated 2007-03-27, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.211
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: type II methyltransferase
    Species: Dengue virus type 2
    Gene: NSP5
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WLZ8
      • see remark 999 (78)
      • see remark 999 (147)
      • see remark 999 (181)
      • see remark 999 (188)
      • see remark 999 (196)
      • see remark 999 (209)
    Domains in SCOP 1.75: d2p1da1
  • Heterogens: SO4, SAH, 5GP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2p1dA (A:)
mrgshhhhhhgsnigetlgekwksrlnalgksefqiykksgiqevdrtlakegikrgetd
hhavsrgsaklrwfvernlvtpegkvvdlgcgrggwsyycgglknvrevkgltkggpghe
epipmstygwnlvrlqsgvdvffippercdtllcdigesspnptveagrtlrvlnlvenw
lsnntqfcvkvlnpymssviekmealqrkhggalvrnplsrnsthemywvsnasgnivss
vnmisrmlinrftmrhkkatyepdvdlgsgtrnigiesetpnldiigkriekikqehets
whydq

    Sequence, based on observed residues (ATOM records): (download) 
    >2p1dA (A:)
etlgekwksrlnalgksefqiykksgiqevdrtlakegikrgetdhhavsrgsaklrwfv
ernlvtpegkvvdlgcgrggwsyycgglknvrevkgltkggpgheepipmstygwnlvrl
qsgvdvffippercdtllcdigesspnptveagrtlrvlnlvenwlsnntqfcvkvlnpy
mssviekmealqrkhggalvrnplsrnsthemywvsnasgnivssvnmisrmlinrftmr
hkkatyepdvdlgsgtrni