PDB entry 2oz1

View 2oz1 on RCSB PDB site
Description: The SoxAX Complex of Rhodovulum Sulfidophilum
Class: electron transport
Keywords: electron transfer,bacterial sulfur cycle, thiosulfate oxidation, cysteine persulfide heme ligand, cytochrome c, electron transport
Deposited on 2007-02-23, released 2008-01-08
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.189
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: diheme cytochrome c
    Species: Rhodovulum sulfidophilum [TaxId:35806]
    Gene: soxA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q939U1 (0-260)
      • modified residue (221)
    Domains in SCOPe 2.01: d2oz1a1, d2oz1a2
  • Chain 'B':
    Compound: cytochrome c
    Species: Rhodovulum sulfidophilum [TaxId:35806]
    Gene: soxX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2oz1b_
  • Chain 'C':
    Compound: diheme cytochrome c
    Species: Rhodovulum sulfidophilum [TaxId:35806]
    Gene: soxA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q939U1 (0-260)
      • modified residue (221)
    Domains in SCOPe 2.01: d2oz1c1, d2oz1c2
  • Chain 'D':
    Compound: cytochrome c
    Species: Rhodovulum sulfidophilum [TaxId:35806]
    Gene: soxX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2oz1d_
  • Chain 'E':
    Compound: diheme cytochrome c
    Species: Rhodovulum sulfidophilum [TaxId:35806]
    Gene: soxA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q939U1 (0-260)
      • modified residue (221)
    Domains in SCOPe 2.01: d2oz1e1, d2oz1e2
  • Chain 'F':
    Compound: cytochrome c
    Species: Rhodovulum sulfidophilum [TaxId:35806]
    Gene: soxX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2oz1f_
  • Chain 'G':
    Compound: diheme cytochrome c
    Species: Rhodovulum sulfidophilum [TaxId:35806]
    Gene: soxA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q939U1 (0-260)
      • modified residue (221)
    Domains in SCOPe 2.01: d2oz1g1, d2oz1g2
  • Chain 'H':
    Compound: cytochrome c
    Species: Rhodovulum sulfidophilum [TaxId:35806]
    Gene: soxX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2oz1h_
  • Heterogens: HEC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2oz1A (A:)
gpddplvingeieivtraptpahladrfdeirsgwtfrtddtqalemddfensgmvfvee
aravwdrpegtegkacadchgavddgmyglravypkyvesagkvrtveqminacrtsrmg
apewdyigpdmtamvaliasvsrgmpvsvaidgpaqstwekgreiyytrygqldlscasc
heqyfdhyiradhlsqgqingfpsyrlknarlnavhdrfrgcirdtrgvpfavgspefva
lelyvasrgnglsvegpsvrn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2oz1B (B:)
aevapgdvaidgqghvarpltdapgdpvegrrlmtdrsvgnciachevtemadaqfpgtv
gpsldgvaarypeamirgilvnsknvfpetvmpayyrvegfnrpgiaftskpiegeirpl
mtagqiedvvaylmtltq

    Sequence, based on observed residues (ATOM records): (download) 
    >2oz1B (B:)
aevapgdvaidgqghvarpltdapgdpvegrrlmtdrsvgnciachevtemaqfpgtvgp
sldgvaarypeamirgilvnsknvfpetvmpayyrvegfnrpgiaftskpiegeirplmt
agqiedvvaylmtlt

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2oz1C (C:)
gpddplvingeieivtraptpahladrfdeirsgwtfrtddtqalemddfensgmvfvee
aravwdrpegtegkacadchgavddgmyglravypkyvesagkvrtveqminacrtsrmg
apewdyigpdmtamvaliasvsrgmpvsvaidgpaqstwekgreiyytrygqldlscasc
heqyfdhyiradhlsqgqingfpsyrlknarlnavhdrfrgcirdtrgvpfavgspefva
lelyvasrgnglsvegpsvrn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2oz1D (D:)
aevapgdvaidgqghvarpltdapgdpvegrrlmtdrsvgnciachevtemadaqfpgtv
gpsldgvaarypeamirgilvnsknvfpetvmpayyrvegfnrpgiaftskpiegeirpl
mtagqiedvvaylmtltq

    Sequence, based on observed residues (ATOM records): (download) 
    >2oz1D (D:)
aevapgdvaidgqghvarpltdapgdpvegrrlmtdrsvgnciachevtemadaqfpgtv
gpsldgvaarypeamirgilvnsknvfpetvmpayyrvegfnrpgiaftskpiegeirpl
mtagqiedvvaylmtlt

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2oz1E (E:)
gpddplvingeieivtraptpahladrfdeirsgwtfrtddtqalemddfensgmvfvee
aravwdrpegtegkacadchgavddgmyglravypkyvesagkvrtveqminacrtsrmg
apewdyigpdmtamvaliasvsrgmpvsvaidgpaqstwekgreiyytrygqldlscasc
heqyfdhyiradhlsqgqingfpsyrlknarlnavhdrfrgcirdtrgvpfavgspefva
lelyvasrgnglsvegpsvrn

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2oz1F (F:)
aevapgdvaidgqghvarpltdapgdpvegrrlmtdrsvgnciachevtemadaqfpgtv
gpsldgvaarypeamirgilvnsknvfpetvmpayyrvegfnrpgiaftskpiegeirpl
mtagqiedvvaylmtltq

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2oz1G (G:)
gpddplvingeieivtraptpahladrfdeirsgwtfrtddtqalemddfensgmvfvee
aravwdrpegtegkacadchgavddgmyglravypkyvesagkvrtveqminacrtsrmg
apewdyigpdmtamvaliasvsrgmpvsvaidgpaqstwekgreiyytrygqldlscasc
heqyfdhyiradhlsqgqingfpsyrlknarlnavhdrfrgcirdtrgvpfavgspefva
lelyvasrgnglsvegpsvrn

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2oz1H (H:)
aevapgdvaidgqghvarpltdapgdpvegrrlmtdrsvgnciachevtemadaqfpgtv
gpsldgvaarypeamirgilvnsknvfpetvmpayyrvegfnrpgiaftskpiegeirpl
mtagqiedvvaylmtltq