PDB entry 2oje

View 2oje on RCSB PDB site
Description: Mycoplasma arthritidis-derived mitogen complexed with class II MHC molecule HLA-DR1/HA complex in the presence of EDTA
Class: immune system
Keywords: superantigen, MHC, IMMUNE SYSTEM
Deposited on 2007-01-12, released 2007-01-23
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.211
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class II histocompatibility antigen, DR alpha chain precursor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01903 (0-179)
      • modified residue (21)
      • modified residue (34)
      • modified residue (71)
    Domains in SCOPe 2.02: d2ojea1, d2ojea2
  • Chain 'B':
    Compound: HLA class II histocompatibility antigen, DRB1-1 beta chain precursor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d2ojeb1, d2ojeb2
  • Chain 'C':
    Compound: haemagglutinin peptide 306-318
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 2OJE (0-12)
  • Chain 'D':
    Compound: Superantigen
    Species: Mycoplasma arthritidis [TaxId:2111]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d2ojed1
  • Chain 'E':
    Compound: HLA class II histocompatibility antigen, DR alpha chain precursor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01903 (0-179)
      • modified residue (21)
      • modified residue (34)
      • modified residue (71)
    Domains in SCOPe 2.02: d2ojee1, d2ojee2
  • Chain 'F':
    Compound: HLA class II histocompatibility antigen, DRB1-1 beta chain precursor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d2ojef1, d2ojef2
  • Chain 'G':
    Compound: haemagglutinin peptide 306-318
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 2OJE (0-12)
  • Chain 'H':
    Compound: Superantigen
    Species: Mycoplasma arthritidis [TaxId:2111]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d2ojeh1
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2ojeA (A:)
    keehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgala
    niavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtw
    lrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2ojeB (B:)
    gdtrprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaey
    wnsqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvs
    gfypgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
    tspltvewra
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2ojeD (D:)
    smklrvenpkkaqkhfvqnlnnvvftnkelediynlsnkeetkevlklfklkvnqfyrha
    fgivndynglleykeifnmmflklsvvfdtqrkeannveqikrniaildeimakadndls
    yfisqnknfqelwdkavkltkemkiklkgqkldlrdgevainkvrelfgsdknvkelwwf
    rsllvkgvylikryyegdielkttsdfakavfed
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2ojeE (E:)
    keehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgala
    niavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtw
    lrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2ojeF (F:)
    gdtrprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaey
    wnsqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvs
    gfypgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
    tspltvewra
    

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2ojeH (H:)
    smklrvenpkkaqkhfvqnlnnvvftnkelediynlsnkeetkevlklfklkvnqfyrha
    fgivndynglleykeifnmmflklsvvfdtqrkeannveqikrniaildeimakadndls
    yfisqnknfqelwdkavkltkemkiklkgqkldlrdgevainkvrelfgsdknvkelwwf
    rsllvkgvylikryyegdielkttsdfakavfed