PDB entry 2oga

View 2oga on RCSB PDB site
Description: X-ray crystal structure of S. venezuelae DesV in complex with ketimine intermediate
Class: hydrolase
Keywords: PLP-dependent enzyme, desosamine, transaminase, deoxysugars, antibiotics, HYDROLASE
Deposited on 2007-01-05, released 2007-05-15
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.169
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transaminase
    Species: STREPTOMYCES VENEZUELAE [TaxId:54571]
    Gene: desV
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2ogaa_
  • Chain 'B':
    Compound: Transaminase
    Species: STREPTOMYCES VENEZUELAE [TaxId:54571]
    Gene: desV
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2ogab_
  • Chain 'C':
    Compound: Transaminase
    Species: STREPTOMYCES VENEZUELAE [TaxId:54571]
    Gene: desV
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2ogac_
  • Chain 'D':
    Compound: Transaminase
    Species: STREPTOMYCES VENEZUELAE [TaxId:54571]
    Gene: desV
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2ogad_
  • Heterogens: CL, NA, EDO, PGU, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ogaA (A:)
mgsshhhhhhssenlyfqghmssraetprvpfldlkaayeelraetdaaiarvldsgryl
lgpelegfeaefaaycetdhavgvnsgmdalqlalrglgigpgdevivpshtyiaswlav
satgatpvpvephedhptldpllvekaitprtrallpvhlyghpadmdalreladrhglh
ivedaaqahgaryrgrrigagssvaafsfypgknlgcfgdggavvtgdpelaerlrmlrn
ygsrqkyshetkgtnsrldemqaavlrirlahldswngrrsalaaeylsglaglpgiglp
vtapdtdpvwhlftvrterrdelrshldargidtlthypvpvhlspayageappegslpr
aesfarqvlslpigphlerpqalrvidavrewaervdqa

    Sequence, based on observed residues (ATOM records): (download) 
    >2ogaA (A:)
tprvpfldlkaayeelraetdaaiarvldsgryllgpelegfeaefaaycetdhavgvns
gmdalqlalrglgigpgdevivpshtyiaswlavsatgatpvpvephedhptldpllvek
aitprtrallpvhlyghpadmdalreladrhglhivedaaqahgaryrgrrigagssvaa
fsfypgknlgcfgdggavvtgdpelaerlrmlrnygsrqkyshetkgtnsrldemqaavl
rirlahldswngrrsalaaeylsglaglpgiglpvtapdtdpvwhlftvrterrdelrsh
ldargidtlthypvpvhlspayageappegslpraesfarqvlslpigphlerpqalrvi
davrewaervd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ogaB (B:)
mgsshhhhhhssenlyfqghmssraetprvpfldlkaayeelraetdaaiarvldsgryl
lgpelegfeaefaaycetdhavgvnsgmdalqlalrglgigpgdevivpshtyiaswlav
satgatpvpvephedhptldpllvekaitprtrallpvhlyghpadmdalreladrhglh
ivedaaqahgaryrgrrigagssvaafsfypgknlgcfgdggavvtgdpelaerlrmlrn
ygsrqkyshetkgtnsrldemqaavlrirlahldswngrrsalaaeylsglaglpgiglp
vtapdtdpvwhlftvrterrdelrshldargidtlthypvpvhlspayageappegslpr
aesfarqvlslpigphlerpqalrvidavrewaervdqa

    Sequence, based on observed residues (ATOM records): (download) 
    >2ogaB (B:)
tprvpfldlkaayeelraetdaaiarvldsgryllgpelegfeaefaaycetdhavgvns
gmdalqlalrglgigpgdevivpshtyiaswlavsatgatpvpvephedhptldpllvek
aitprtrallpvhlyghpadmdalreladrhglhivedaaqahgaryrgrrigagssvaa
fsfypgknlgcfgdggavvtgdpelaerlrmlrnygsrqkyshetkgtnsrldemqaavl
rirlahldswngrrsalaaeylsglaglpgiglpvtapdtdpvwhlftvrterrdelrsh
ldargidtlthypvpvhlspayageappegslpraesfarqvlslpigphlerpqalrvi
davrewaerv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2ogaC (C:)
mgsshhhhhhssenlyfqghmssraetprvpfldlkaayeelraetdaaiarvldsgryl
lgpelegfeaefaaycetdhavgvnsgmdalqlalrglgigpgdevivpshtyiaswlav
satgatpvpvephedhptldpllvekaitprtrallpvhlyghpadmdalreladrhglh
ivedaaqahgaryrgrrigagssvaafsfypgknlgcfgdggavvtgdpelaerlrmlrn
ygsrqkyshetkgtnsrldemqaavlrirlahldswngrrsalaaeylsglaglpgiglp
vtapdtdpvwhlftvrterrdelrshldargidtlthypvpvhlspayageappegslpr
aesfarqvlslpigphlerpqalrvidavrewaervdqa

    Sequence, based on observed residues (ATOM records): (download) 
    >2ogaC (C:)
prvpfldlkaayeelraetdaaiarvldsgryllgpelegfeaefaaycetdhavgvnsg
mdalqlalrglgigpgdevivpshtyiaswlavsatgatpvpvephedhptldpllveka
itprtrallpvhlyghpadmdalreladrhglhivedaaqahgaryrgrrigagssvaaf
sfypgknlgcfgdggavvtgdpelaerlrmlrnygsrqkyshetkgtnsrldemqaavlr
irlahldswngrrsalaaeylsglaglpgiglpvtapdtdpvwhlftvrterrdelrshl
dargidtlthypvpvhlspayageappegslpraesfarqvlslpigphlerpqalrvid
avrewaerv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2ogaD (D:)
mgsshhhhhhssenlyfqghmssraetprvpfldlkaayeelraetdaaiarvldsgryl
lgpelegfeaefaaycetdhavgvnsgmdalqlalrglgigpgdevivpshtyiaswlav
satgatpvpvephedhptldpllvekaitprtrallpvhlyghpadmdalreladrhglh
ivedaaqahgaryrgrrigagssvaafsfypgknlgcfgdggavvtgdpelaerlrmlrn
ygsrqkyshetkgtnsrldemqaavlrirlahldswngrrsalaaeylsglaglpgiglp
vtapdtdpvwhlftvrterrdelrshldargidtlthypvpvhlspayageappegslpr
aesfarqvlslpigphlerpqalrvidavrewaervdqa

    Sequence, based on observed residues (ATOM records): (download) 
    >2ogaD (D:)
tprvpfldlkaayeelraetdaaiarvldsgryllgpelegfeaefaaycetdhavgvns
gmdalqlalrglgigpgdevivpshtyiaswlavsatgatpvpvephedhptldpllvek
aitprtrallpvhlyghpadmdalreladrhglhivedaaqahgaryrgrrigagssvaa
fsfypgknlgcfgdggavvtgdpelaerlrmlrnygsrqkyshetkgtnsrldemqaavl
rirlahldswngrrsalaaeylsglaglpgiglpvtapdtdpvwhlftvrterrdelrsh
ldargidtlthypvpvhlspayageappegslpraesfarqvlslpigphlerpqalrvi
davrewaerv