PDB entry 2o7p

View 2o7p on RCSB PDB site
Description: The crystal structure of RibD from Escherichia coli in complex with the oxidised NADP+ cofactor in the active site of the reductase domain
Class: hydrolase, oxidoreductase
Keywords: NADP+ complex, alpha and beta class with mainly parallell beta strands, Structural Genomics, HTP-protein Escherichia coli, Structural Proteomics in Europe, SPINE, HYDROLASE, OXIDOREDUCTASE
Deposited on 2006-12-11, released 2007-02-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-06-03, with a file datestamp of 2015-05-29.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Riboflavin biosynthesis protein ribD
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P25539 (6-371)
      • cloning artifact (0-5)
    Domains in SCOPe 2.08: d2o7pa1, d2o7pa2, d2o7pa3
  • Chain 'B':
    Compound: Riboflavin biosynthesis protein ribD
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P25539 (6-371)
      • cloning artifact (0-5)
    Domains in SCOPe 2.08: d2o7pb1, d2o7pb2, d2o7pb3
  • Heterogens: NAP

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2o7pA (A:)
tlyiqgqdeyymaralklaqrgrftthpnpnvgcvivkdgeivgegyhqragephaevha
lrmagekakgatayvtlepcshhgrtppccdaliaagvarvvasmqdpnpqvagrglyrl
qqagidvshglmmseaeqlnkgflkrmrtgfpyiqlklgasldgrtamasgesqwitspq
arrdvqllraqshailtssatvladdpaltvrwseldeqtqalypqqnlrqpirividsq
nrvtpvhrivqqpgetwfartqedsrewpetvrtllipehkghldlvvlmmqlgkqqins
iwveagptlagallqaglvdelivyiapkllgsdarglctlpglekladapqfkfkeirh
vgpdvclhlvgasthhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2o7pA (A:)
tlyiqgqdeyymaralklaqrgrftthpnpnvgcvivkdgeivgegyhqragephaevha
lrmagekakgatayvtlepcppccdaliaagvarvvasmqdpnqvagrglyrlqqagidv
shglmmseaeqlnkgflkrmrtgfpyiqlklgasldgrtamasgesqwitspqarrdvql
lraqshailtssatvladdpaltvrwseldeqtqalypqqnlrqpirividsqnrvtpvh
rivqqpgetwfartqedsrewpetvrtllipehkghldlvvlmmqlgkqqinsiwveagp
tlagallqaglvdelivyiapkllgsdarglctlpglqfkfkeirhvgpdvclhlvga

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2o7pB (B:)
tlyiqgqdeyymaralklaqrgrftthpnpnvgcvivkdgeivgegyhqragephaevha
lrmagekakgatayvtlepcshhgrtppccdaliaagvarvvasmqdpnpqvagrglyrl
qqagidvshglmmseaeqlnkgflkrmrtgfpyiqlklgasldgrtamasgesqwitspq
arrdvqllraqshailtssatvladdpaltvrwseldeqtqalypqqnlrqpirividsq
nrvtpvhrivqqpgetwfartqedsrewpetvrtllipehkghldlvvlmmqlgkqqins
iwveagptlagallqaglvdelivyiapkllgsdarglctlpglekladapqfkfkeirh
vgpdvclhlvgasthhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2o7pB (B:)
tlyiqgqdeyymaralklaqrgrftthpnpnvgcvivkdgeivgegyhqragephaevha
lrmagekakgatayvtlepcdaliaagvarvvasmqdpnqvagrglyrlqqagidvshgl
mmseaeqlnkgflkrmrtgfpyiqlklgasldgrtwitspqarrdvqllraqshailtss
atvladdpaltvrwseldeqtqalypqqnlrqpirividsqnrvtpvhrivqqpgetwfa
rtqedsrewpetvrtllipehkghldlvvlmmqlgkqqinsiwveagptlagallqaglv
delivyiapkllgsdarglctlpglekladapqfkfkeirhvgpdvclhlvga