PDB entry 2ny5
View 2ny5 on RCSB PDB site
Description: HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, I109C, T257S, V275C, S334A, S375W, Q428C, A433M) Complexed with CD4 and Antibody 17b
Class: viral protein/immune system
Keywords: HIV, gp120, antibody, CD4
Deposited on
2006-11-20, released
2007-02-06
The last revision prior to the SCOP 1.73 freeze date was dated
2007-02-27, with a file datestamp of
2007-06-28.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.201
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'C':
Compound: T-cell surface glycoprotein cd4
Species: HOMO SAPIENS
Gene: CD4
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d2ny5c1, d2ny5c2 - Chain 'G':
Compound: envelope glycoprotein gp120
Species: Human immunodeficiency virus 1
- Chain 'H':
Compound: antibody 17b, heavy chain
Species: HOMO SAPIENS
Domains in SCOP 1.73: d2ny5h1, d2ny5h2 - Chain 'L':
Compound: antibody 17b, light chain
Species: HOMO SAPIENS
Domains in SCOP 1.73: d2ny5l1, d2ny5l2 - Heterogens: NAG, SUC, HOH
PDB Chain Sequences:
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2ny5C (C:)
mkkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkgpsklndradsrr
slwdqgnfpliiknlkiedsdtyicevedqkeevqllvfgltansdthllqgqsltltle
sppgsspsvqcrsprgkniqggktlsvsqlelqdsgtwtctvlqnqkkvefkidivvlaf
qkas
Sequence, based on observed residues (ATOM records): (download)
>2ny5C (C:)
kkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkgpsklndradsrrs
lwdqgnfpliiknlkiedsdtyicevedqkeevqllvfgltansdthllqgqsltltles
ppgsspsvqcrsprgkniqggktlsvsqlelqdsgtwtctvlqnqkkvefkidivvlafq
k
- Chain 'G':
No sequence available.
- Chain 'H':
Sequence, based on SEQRES records: (download)
>2ny5H (H:)
evqlvesgaevkkpgssvkvsckasgdtfirysftwvrqapgqglewmgriitildvahy
aphlqgrvtitadkststvylelrnlrsddtavyfcagvyegeadegeydnngflkhwgq
gtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvht
fpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk
Sequence, based on observed residues (ATOM records): (download)
>2ny5H (H:)
evqlvesgaevkkpgssvkvsckasgdtfirysftwvrqapgqglewmgriitildvahy
aphlqgrvtitadkststvylelrnlrsddtavyfcagvyegeadegeydnngflkhwgq
gtlvtvssastkgpsvfplapgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvep
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>2ny5L (L:)
divmtqspatlsvspgeratlscrasesvssdlawyqqkpgqaprlliygastratgvpa
rfsgsgsgaeftltisslqsedfavyycqqynnwpprytfgqgtrleikrtvaapsvfif
ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrg